miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8205 5' -56.4 NC_001978.2 + 31635 1.13 0.000285
Target:  5'- aGCACAGCAACUCGACGCACCCCAGCCc -3'
miRNA:   3'- -CGUGUCGUUGAGCUGCGUGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 2228 0.77 0.127061
Target:  5'- -uGCGGCAACcaugUCGACGCACCgcgcacgaacugacUCAGCCg -3'
miRNA:   3'- cgUGUCGUUG----AGCUGCGUGG--------------GGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 32188 0.76 0.135575
Target:  5'- -uGCGGCAAgcUGACGCGCCUgAGCCg -3'
miRNA:   3'- cgUGUCGUUgaGCUGCGUGGGgUCGG- -5'
8205 5' -56.4 NC_001978.2 + 33668 0.76 0.135575
Target:  5'- uCGCuguGgGACUCGAUGCAUUCCGGCCc -3'
miRNA:   3'- cGUGu--CgUUGAGCUGCGUGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 6489 0.76 0.143401
Target:  5'- -gGCAGCGACgUCgGGCGCcaauuucCCCCAGCCu -3'
miRNA:   3'- cgUGUCGUUG-AG-CUGCGu------GGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 33651 0.76 0.151639
Target:  5'- -aACGGCAAgaCGACGaCGCUUCAGCCg -3'
miRNA:   3'- cgUGUCGUUgaGCUGC-GUGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 13106 0.75 0.156351
Target:  5'- gGUACGGCGacgguaggaaugccGCUCGACGCugCCgaccccgacacgcuuCAGCCu -3'
miRNA:   3'- -CGUGUCGU--------------UGAGCUGCGugGG---------------GUCGG- -5'
8205 5' -56.4 NC_001978.2 + 23263 0.74 0.183945
Target:  5'- gGCuCAGCucUUCGGCgGCACCCCGGUUg -3'
miRNA:   3'- -CGuGUCGuuGAGCUG-CGUGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 1828 0.74 0.187491
Target:  5'- aGCACAGCGACcuauUCGACGCGCUgacgcugggcagugCC-GCCc -3'
miRNA:   3'- -CGUGUCGUUG----AGCUGCGUGG--------------GGuCGG- -5'
8205 5' -56.4 NC_001978.2 + 24969 0.74 0.194236
Target:  5'- uGCGCAGCG--UCGGCGCcCCCCuuGCUc -3'
miRNA:   3'- -CGUGUCGUugAGCUGCGuGGGGu-CGG- -5'
8205 5' -56.4 NC_001978.2 + 24577 0.74 0.205027
Target:  5'- cCACA-CAAC-CGACGCGCCCCGGg- -3'
miRNA:   3'- cGUGUcGUUGaGCUGCGUGGGGUCgg -5'
8205 5' -56.4 NC_001978.2 + 654 0.73 0.228169
Target:  5'- aCGCGGCGuACaCGGCGCgggugGCCUCAGCCu -3'
miRNA:   3'- cGUGUCGU-UGaGCUGCG-----UGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 31112 0.73 0.228169
Target:  5'- aGCACAGCGGCaa---GCGCCUCAGCa -3'
miRNA:   3'- -CGUGUCGUUGagcugCGUGGGGUCGg -5'
8205 5' -56.4 NC_001978.2 + 16736 0.73 0.23429
Target:  5'- cGCAUAGCGGCaa-GCGCGCcgguuuccugCCCAGCCu -3'
miRNA:   3'- -CGUGUCGUUGagcUGCGUG----------GGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 16697 0.73 0.23429
Target:  5'- gGCAguGCGACggaaucCGAcuucacaacuacCGCGCCCCuGCCg -3'
miRNA:   3'- -CGUguCGUUGa-----GCU------------GCGUGGGGuCGG- -5'
8205 5' -56.4 NC_001978.2 + 40644 0.72 0.246945
Target:  5'- gGUugAGCGAC-CGGCGUugccuCCCUAGCUc -3'
miRNA:   3'- -CGugUCGUUGaGCUGCGu----GGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 19537 0.72 0.246945
Target:  5'- gGCACGGCGucAC-CGAucgUGCGCCCCAuCCa -3'
miRNA:   3'- -CGUGUCGU--UGaGCU---GCGUGGGGUcGG- -5'
8205 5' -56.4 NC_001978.2 + 8228 0.71 0.28106
Target:  5'- gGCuCAGCGGCUCG-CGUGCCgUAuGCCg -3'
miRNA:   3'- -CGuGUCGUUGAGCuGCGUGGgGU-CGG- -5'
8205 5' -56.4 NC_001978.2 + 1313 0.71 0.28106
Target:  5'- uGCGCGGCAcauucccgcugACgCGACGguUCCCAGUg -3'
miRNA:   3'- -CGUGUCGU-----------UGaGCUGCguGGGGUCGg -5'
8205 5' -56.4 NC_001978.2 + 15737 0.71 0.283945
Target:  5'- aCACAGUgAACUgGGCGUacgugucgccgucgaGCCCCAGCg -3'
miRNA:   3'- cGUGUCG-UUGAgCUGCG---------------UGGGGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.