Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8219 | 5' | -47.1 | NC_001978.2 | + | 2387 | 0.67 | 0.977967 |
Target: 5'- cGCGAAGAgcuacacacggcgCUCGACGuguacCGGgugcGGAACCu -3' miRNA: 3'- cCGCUUCUaa-----------GAGCUGU-----GCU----UCUUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 2908 | 0.67 | 0.962184 |
Target: 5'- gGGCGggGGcacuccccagcgCUCGACggcauugaggcGCGAgccugGGAACCg -3' miRNA: 3'- -CCGCuuCUaa----------GAGCUG-----------UGCU-----UCUUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 3816 | 0.66 | 0.98613 |
Target: 5'- cGGCGGcacgccaaAGAUUC---GCGCGAuuuccGGAACCu -3' miRNA: 3'- -CCGCU--------UCUAAGagcUGUGCU-----UCUUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 4105 | 0.71 | 0.855085 |
Target: 5'- gGGCGAAG----UCG--GCGAAGAGCCg -3' miRNA: 3'- -CCGCUUCuaagAGCugUGCUUCUUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 4167 | 0.7 | 0.903455 |
Target: 5'- cGGCgGAAGAgc--CGG-ACGAAGAGCCg -3' miRNA: 3'- -CCG-CUUCUaagaGCUgUGCUUCUUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 6530 | 0.66 | 0.983932 |
Target: 5'- cGCGAAGGUg--CGACuguuCGAAGcccugaaGGCCa -3' miRNA: 3'- cCGCUUCUAagaGCUGu---GCUUC-------UUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 7173 | 0.73 | 0.74369 |
Target: 5'- aGGCGAacuugAGAUUgacguaCUCGACGCc-GGAGCCg -3' miRNA: 3'- -CCGCU-----UCUAA------GAGCUGUGcuUCUUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 7596 | 0.69 | 0.917196 |
Target: 5'- cGGCGAA----CUgGGCAUGAAGAccgACCg -3' miRNA: 3'- -CCGCUUcuaaGAgCUGUGCUUCU---UGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 8600 | 0.69 | 0.935475 |
Target: 5'- cGCGAAGcaUCggGGCACGGcgcGAACCg -3' miRNA: 3'- cCGCUUCuaAGagCUGUGCUu--CUUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 9154 | 0.66 | 0.981946 |
Target: 5'- cGGCGAAuccgUCgcCGACGCGAAcGaAGCCc -3' miRNA: 3'- -CCGCUUcua-AGa-GCUGUGCUU-C-UUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 10855 | 0.69 | 0.940944 |
Target: 5'- -cCGAAGAUUCgCGcCAUGGGuGGACCg -3' miRNA: 3'- ccGCUUCUAAGaGCuGUGCUU-CUUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 12580 | 0.66 | 0.987921 |
Target: 5'- cGGCGAuuGGUUC-----ACGAAGGACCc -3' miRNA: 3'- -CCGCUu-CUAAGagcugUGCUUCUUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 12639 | 0.72 | 0.80749 |
Target: 5'- aGGCGAAGGa---CGGCACGAAcGuAACCg -3' miRNA: 3'- -CCGCUUCUaagaGCUGUGCUU-C-UUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 16321 | 0.69 | 0.929694 |
Target: 5'- cGGaCGGAGuugccccgCUCGACuccGCGAAGcGCCu -3' miRNA: 3'- -CC-GCUUCuaa-----GAGCUG---UGCUUCuUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 17354 | 0.67 | 0.967423 |
Target: 5'- cGGCaacGggGGcggCUCGcACACGGAGAuuuGCUa -3' miRNA: 3'- -CCG---CuuCUaa-GAGC-UGUGCUUCU---UGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 17741 | 0.71 | 0.855085 |
Target: 5'- cGCGAAGGgcUUCggCGACGCGuacAAGGACg -3' miRNA: 3'- cCGCUUCU--AAGa-GCUGUGC---UUCUUGg -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 17867 | 0.76 | 0.625091 |
Target: 5'- gGGCGAAGGgucgcugacgaagcUUCUCGGCaagcuucccGCGAAGGcgaaGCCg -3' miRNA: 3'- -CCGCUUCU--------------AAGAGCUG---------UGCUUCU----UGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 19398 | 0.75 | 0.639131 |
Target: 5'- cGCGAAGAUcCUUGccgcugaggcggaGCGCGAAGAGCg -3' miRNA: 3'- cCGCUUCUAaGAGC-------------UGUGCUUCUUGg -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 19509 | 0.72 | 0.7973 |
Target: 5'- cGGCc-GGAcgUUCGACACGGAGcuGACCg -3' miRNA: 3'- -CCGcuUCUaaGAGCUGUGCUUC--UUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 19550 | 0.68 | 0.950959 |
Target: 5'- cGUGAAGggUCaCGGCACGgcGucACCg -3' miRNA: 3'- cCGCUUCuaAGaGCUGUGCuuCu-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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