miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8482 5' -53.8 NC_002169.1 + 89641 0.66 0.958563
Target:  5'- cAgCGGCGCCGuaaccaccacuguuuGCGgUGuCGCUGACGa -3'
miRNA:   3'- aUgGCUGUGGC---------------UGUgACuGUGACUGC- -5'
8482 5' -53.8 NC_002169.1 + 53627 0.66 0.948899
Target:  5'- cACCGGCGgCGGCGacgacCUGAUACUuGGCc -3'
miRNA:   3'- aUGGCUGUgGCUGU-----GACUGUGA-CUGc -5'
8482 5' -53.8 NC_002169.1 + 26353 0.66 0.944464
Target:  5'- cGCCGGCGacgUCGuuGCGCUGcCAuCUGACGa -3'
miRNA:   3'- aUGGCUGU---GGC--UGUGACuGU-GACUGC- -5'
8482 5' -53.8 NC_002169.1 + 41530 0.66 0.944464
Target:  5'- aUACuCGACugCGGCA-UGAUACUGucCGa -3'
miRNA:   3'- -AUG-GCUGugGCUGUgACUGUGACu-GC- -5'
8482 5' -53.8 NC_002169.1 + 82550 0.67 0.93486
Target:  5'- gGCCGACAUgucaaaguUGACuCUGACGCgcaugcgGGCGu -3'
miRNA:   3'- aUGGCUGUG--------GCUGuGACUGUGa------CUGC- -5'
8482 5' -53.8 NC_002169.1 + 112939 0.67 0.929686
Target:  5'- aACCGACuacgaCGACGCcGACAUUG-CGu -3'
miRNA:   3'- aUGGCUGug---GCUGUGaCUGUGACuGC- -5'
8482 5' -53.8 NC_002169.1 + 97067 0.67 0.929686
Target:  5'- cUGCCGACGgugucgaCGACGCUGcCGgUGAUGc -3'
miRNA:   3'- -AUGGCUGUg------GCUGUGACuGUgACUGC- -5'
8482 5' -53.8 NC_002169.1 + 99903 0.67 0.924264
Target:  5'- uUGCCGACGCCuuGAUcaaAC-GACACUGAa- -3'
miRNA:   3'- -AUGGCUGUGG--CUG---UGaCUGUGACUgc -5'
8482 5' -53.8 NC_002169.1 + 129976 0.67 0.924264
Target:  5'- aGCgCGACGCgCGACAUUGucgcCAUUGugGu -3'
miRNA:   3'- aUG-GCUGUG-GCUGUGACu---GUGACugC- -5'
8482 5' -53.8 NC_002169.1 + 61508 0.67 0.918593
Target:  5'- cACCGuCGCCGAUcuaauACUcaacGACACgGACGa -3'
miRNA:   3'- aUGGCuGUGGCUG-----UGA----CUGUGaCUGC- -5'
8482 5' -53.8 NC_002169.1 + 1536 0.67 0.918593
Target:  5'- cUAUUGACGuuGACAUuggUGGCGgUGGCGg -3'
miRNA:   3'- -AUGGCUGUggCUGUG---ACUGUgACUGC- -5'
8482 5' -53.8 NC_002169.1 + 14362 0.67 0.918593
Target:  5'- aAUCGAUACCGAUGCUGGaaaacCACgaaGACa -3'
miRNA:   3'- aUGGCUGUGGCUGUGACU-----GUGa--CUGc -5'
8482 5' -53.8 NC_002169.1 + 37973 0.67 0.918593
Target:  5'- cGCCGGaguaGACAaacUUGACGCUGACGu -3'
miRNA:   3'- aUGGCUguggCUGU---GACUGUGACUGC- -5'
8482 5' -53.8 NC_002169.1 + 45407 0.67 0.918593
Target:  5'- cGCCGGCGCCGAaaCGCuUGuauuCGCcGACGc -3'
miRNA:   3'- aUGGCUGUGGCU--GUG-ACu---GUGaCUGC- -5'
8482 5' -53.8 NC_002169.1 + 79968 0.67 0.915071
Target:  5'- aGCCGAgAuggcgggcggccucuUCGACGCUGcCGCUGGCc -3'
miRNA:   3'- aUGGCUgU---------------GGCUGUGACuGUGACUGc -5'
8482 5' -53.8 NC_002169.1 + 56592 0.68 0.900098
Target:  5'- cAUCGACGCCGAUcucguaaacGCgGGCGCcGGCGu -3'
miRNA:   3'- aUGGCUGUGGCUG---------UGaCUGUGaCUGC- -5'
8482 5' -53.8 NC_002169.1 + 99866 0.68 0.886557
Target:  5'- -uCCGACGaugaCGACAUUGACGaguaUGAUGa -3'
miRNA:   3'- auGGCUGUg---GCUGUGACUGUg---ACUGC- -5'
8482 5' -53.8 NC_002169.1 + 35588 0.69 0.864504
Target:  5'- aUAUCGGCACCGACA--GACACUugGAUu -3'
miRNA:   3'- -AUGGCUGUGGCUGUgaCUGUGA--CUGc -5'
8482 5' -53.8 NC_002169.1 + 104777 0.69 0.856709
Target:  5'- cGCCGACGuuGuucguuuuGCugUGACAUUGAUa -3'
miRNA:   3'- aUGGCUGUggC--------UGugACUGUGACUGc -5'
8482 5' -53.8 NC_002169.1 + 14021 0.69 0.848704
Target:  5'- aUGCCcACGCCGGCGCgcaACAC-GACGg -3'
miRNA:   3'- -AUGGcUGUGGCUGUGac-UGUGaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.