miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8483 3' -51 NC_002169.1 + 48181 0.66 0.994125
Target:  5'- aAUCGAgauagCGGCAUCgcgGGCAgaccCGACGa -3'
miRNA:   3'- gUAGCUaca--GCUGUAG---CCGUa---GCUGC- -5'
8483 3' -51 NC_002169.1 + 89093 0.66 0.994125
Target:  5'- -uUCGGUacGUCGACgaaauacaGUCGGCAcaGACGa -3'
miRNA:   3'- guAGCUA--CAGCUG--------UAGCCGUagCUGC- -5'
8483 3' -51 NC_002169.1 + 55649 0.66 0.993209
Target:  5'- -uUUGAUGauuUCGACGUaCGcGCAUaCGACGu -3'
miRNA:   3'- guAGCUAC---AGCUGUA-GC-CGUA-GCUGC- -5'
8483 3' -51 NC_002169.1 + 96911 0.66 0.993209
Target:  5'- gCGUCG---UCGACAccgUCGGCAgcgUCGACc -3'
miRNA:   3'- -GUAGCuacAGCUGU---AGCCGU---AGCUGc -5'
8483 3' -51 NC_002169.1 + 56753 0.66 0.993209
Target:  5'- cCcgCGuuuaCGAgAUCGGCGUCGAUGu -3'
miRNA:   3'- -GuaGCuacaGCUgUAGCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 100023 0.66 0.993209
Target:  5'- uCGUCaAUGUCGucauCGUCGG-AUUGACGc -3'
miRNA:   3'- -GUAGcUACAGCu---GUAGCCgUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 113481 0.66 0.993209
Target:  5'- --gCGuuUGUCGugAUCGGaCAUgGAUGg -3'
miRNA:   3'- guaGCu-ACAGCugUAGCC-GUAgCUGC- -5'
8483 3' -51 NC_002169.1 + 32871 0.66 0.992181
Target:  5'- aGUCGugauaaguuUGUCGACGaCGuCGUCGACGc -3'
miRNA:   3'- gUAGCu--------ACAGCUGUaGCcGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 24352 0.66 0.992181
Target:  5'- aAUCGuUGUCGGCGUCaugGGUguacacGUUGGCGa -3'
miRNA:   3'- gUAGCuACAGCUGUAG---CCG------UAGCUGC- -5'
8483 3' -51 NC_002169.1 + 115261 0.66 0.992181
Target:  5'- --aUGAUGUCGAUGUCGuauuCcUCGACGa -3'
miRNA:   3'- guaGCUACAGCUGUAGCc---GuAGCUGC- -5'
8483 3' -51 NC_002169.1 + 109405 0.66 0.991034
Target:  5'- uUAUCGucacUGUCGACGUCGuCGUUGuCGu -3'
miRNA:   3'- -GUAGCu---ACAGCUGUAGCcGUAGCuGC- -5'
8483 3' -51 NC_002169.1 + 108713 0.66 0.989758
Target:  5'- cCGUCGuggaAUGUggCGGCggCGGCggCGACGa -3'
miRNA:   3'- -GUAGC----UACA--GCUGuaGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 6836 0.67 0.985068
Target:  5'- uUAUCGAcguUGUCGuCGUCGuCGUCGuCGg -3'
miRNA:   3'- -GUAGCU---ACAGCuGUAGCcGUAGCuGC- -5'
8483 3' -51 NC_002169.1 + 35694 0.67 0.985068
Target:  5'- cCGUUGAugacaaacuUGUCGuauuCGUCGGCAUaaaaguaGACGg -3'
miRNA:   3'- -GUAGCU---------ACAGCu---GUAGCCGUAg------CUGC- -5'
8483 3' -51 NC_002169.1 + 117411 0.67 0.983187
Target:  5'- aCGUCG---UCGACAUUGGCAUCa--- -3'
miRNA:   3'- -GUAGCuacAGCUGUAGCCGUAGcugc -5'
8483 3' -51 NC_002169.1 + 1536 0.67 0.981132
Target:  5'- cUAUUGAcGUUGACAUUGGUGgcgguggCGGCGg -3'
miRNA:   3'- -GUAGCUaCAGCUGUAGCCGUa------GCUGC- -5'
8483 3' -51 NC_002169.1 + 85867 0.67 0.981132
Target:  5'- aCGUCGaAUG-CGcCGUCGGCGaCGACc -3'
miRNA:   3'- -GUAGC-UACaGCuGUAGCCGUaGCUGc -5'
8483 3' -51 NC_002169.1 + 107515 0.68 0.978661
Target:  5'- uCGUUGGUGuuuUCGGCGaCGGCAUugguggcCGACGa -3'
miRNA:   3'- -GUAGCUAC---AGCUGUaGCCGUA-------GCUGC- -5'
8483 3' -51 NC_002169.1 + 97079 0.68 0.976467
Target:  5'- --aUGcgGUCGACGcugccgaCGGUGUCGACGa -3'
miRNA:   3'- guaGCuaCAGCUGUa------GCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 53536 0.68 0.976467
Target:  5'- -cUCGGUGUUGACGagaaucgagucuUUGGCuuugaucacgaaAUCGACGg -3'
miRNA:   3'- guAGCUACAGCUGU------------AGCCG------------UAGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.