miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8483 3' -51 NC_002169.1 + 22096 0.73 0.814004
Target:  5'- aAUCGAUaaacacccGUCuGACGUCGGCGUCGuGCa -3'
miRNA:   3'- gUAGCUA--------CAG-CUGUAGCCGUAGC-UGc -5'
8483 3' -51 NC_002169.1 + 107329 0.78 0.570933
Target:  5'- aGUCcGUGUaCGACAacggCGGCAUCGACGa -3'
miRNA:   3'- gUAGcUACA-GCUGUa---GCCGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 121409 0.69 0.949303
Target:  5'- -cUUGAUGaUGACAUUGGCAUaGGCGu -3'
miRNA:   3'- guAGCUACaGCUGUAGCCGUAgCUGC- -5'
8483 3' -51 NC_002169.1 + 75225 0.7 0.918835
Target:  5'- --cCGAUGUCGAUGgucCGGCcgauGUCGAUGg -3'
miRNA:   3'- guaGCUACAGCUGUa--GCCG----UAGCUGC- -5'
8483 3' -51 NC_002169.1 + 133662 0.74 0.786389
Target:  5'- aCAUCGAcccaUCGGCGUCGGCAUacaggguuuggcCGACGc -3'
miRNA:   3'- -GUAGCUac--AGCUGUAGCCGUA------------GCUGC- -5'
8483 3' -51 NC_002169.1 + 74901 0.69 0.964693
Target:  5'- --aCGAUGgCGACGaCGGCGgagaCGACGa -3'
miRNA:   3'- guaGCUACaGCUGUaGCCGUa---GCUGC- -5'
8483 3' -51 NC_002169.1 + 81951 0.7 0.93
Target:  5'- uCGUCGAUGUCGACGUCaaauuuGUUGAUGu -3'
miRNA:   3'- -GUAGCUACAGCUGUAGccg---UAGCUGC- -5'
8483 3' -51 NC_002169.1 + 24352 0.66 0.992181
Target:  5'- aAUCGuUGUCGGCGUCaugGGUguacacGUUGGCGa -3'
miRNA:   3'- gUAGCuACAGCUGUAG---CCG------UAGCUGC- -5'
8483 3' -51 NC_002169.1 + 15262 0.8 0.489797
Target:  5'- -cUUGAUGUCGACGagGGgAUCGACGa -3'
miRNA:   3'- guAGCUACAGCUGUagCCgUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 99774 0.7 0.935202
Target:  5'- aAUCGGaugaauagaucUGUCaauGAUAUCGGCAucUCGGCGa -3'
miRNA:   3'- gUAGCU-----------ACAG---CUGUAGCCGU--AGCUGC- -5'
8483 3' -51 NC_002169.1 + 4449 0.7 0.935202
Target:  5'- uGUCGGUGUCGGUAUCGuCAUCGuccuCGa -3'
miRNA:   3'- gUAGCUACAGCUGUAGCcGUAGCu---GC- -5'
8483 3' -51 NC_002169.1 + 1329 0.7 0.93
Target:  5'- --aCGAUGaCGGCggCGGCggCGGCGg -3'
miRNA:   3'- guaGCUACaGCUGuaGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 71812 0.72 0.856422
Target:  5'- -uUCGAUGgCGugAUCGGUcaCGACGg -3'
miRNA:   3'- guAGCUACaGCugUAGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 57757 0.71 0.906662
Target:  5'- -uUCGAcguaaaUGUCGugcACGUCGGCGUCgGACa -3'
miRNA:   3'- guAGCU------ACAGC---UGUAGCCGUAG-CUGc -5'
8483 3' -51 NC_002169.1 + 85867 0.67 0.981132
Target:  5'- aCGUCGaAUG-CGcCGUCGGCGaCGACc -3'
miRNA:   3'- -GUAGC-UACaGCuGUAGCCGUaGCUGc -5'
8483 3' -51 NC_002169.1 + 108713 0.66 0.989758
Target:  5'- cCGUCGuggaAUGUggCGGCggCGGCggCGACGa -3'
miRNA:   3'- -GUAGC----UACA--GCUGuaGCCGuaGCUGC- -5'
8483 3' -51 NC_002169.1 + 128819 0.72 0.848338
Target:  5'- uCGUCGaAUGUCGACAaCGGCAaaGAUa -3'
miRNA:   3'- -GUAGC-UACAGCUGUaGCCGUagCUGc -5'
8483 3' -51 NC_002169.1 + 32871 0.66 0.992181
Target:  5'- aGUCGugauaaguuUGUCGACGaCGuCGUCGACGc -3'
miRNA:   3'- gUAGCu--------ACAGCUGUaGCcGUAGCUGC- -5'
8483 3' -51 NC_002169.1 + 55649 0.66 0.993209
Target:  5'- -uUUGAUGauuUCGACGUaCGcGCAUaCGACGu -3'
miRNA:   3'- guAGCUAC---AGCUGUA-GC-CGUA-GCUGC- -5'
8483 3' -51 NC_002169.1 + 96911 0.66 0.993209
Target:  5'- gCGUCG---UCGACAccgUCGGCAgcgUCGACc -3'
miRNA:   3'- -GUAGCuacAGCUGU---AGCCGU---AGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.