miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8484 3' -42.1 NC_002169.1 + 41111 0.66 1
Target:  5'- -aUAGUGCG-GAUCggUGCUcUCGa- -3'
miRNA:   3'- aaAUCAUGUaCUAGaaACGAaAGCag -5'
8484 3' -42.1 NC_002169.1 + 10713 0.66 1
Target:  5'- uUUUAGUACAcaAUgUUUGCUUucaucuacgaUCGUCg -3'
miRNA:   3'- -AAAUCAUGUacUAgAAACGAA----------AGCAG- -5'
8484 3' -42.1 NC_002169.1 + 105690 0.69 0.999987
Target:  5'- ----aUACAcGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 42376 0.7 0.999975
Target:  5'- -----cACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucaUGUacUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 105407 0.7 0.999952
Target:  5'- cUUUAaUACAcGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AAAUcAUGUaCUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 10326 0.71 0.999911
Target:  5'- ---cGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- aaauCAUGUACU--------AGAAACGaaAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 41873 0.71 0.999911
Target:  5'- ----aUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 42453 0.71 0.999731
Target:  5'- --aAGUcaaACAcaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCA---UGUacUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 105322 0.72 0.999284
Target:  5'- --aAGUACAcaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUacUAgAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 105600 0.74 0.997934
Target:  5'- ----aUACAcaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUacUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 104956 0.75 0.99569
Target:  5'- -aUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAuGUacUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 41772 0.75 0.994893
Target:  5'- ----aUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGuaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 119325 0.75 0.992941
Target:  5'- -aUAG-AC--GAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCaUGuaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 105039 0.75 0.992941
Target:  5'- -aUAuUGCAUcagccuacucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUcAUGUA----------CUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 52662 0.77 0.981107
Target:  5'- uUUUAGUACAcGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUaCUAgAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 11570 0.77 0.981107
Target:  5'- -cUAGUACucGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUCAUGuaCUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 105145 0.78 0.966223
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaaucaUGUACUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 52978 0.78 0.966223
Target:  5'- uUUUAGUACAccAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUacUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 105202 0.79 0.954089
Target:  5'- uUUUAaUACAcGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AAAUcAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 52898 0.8 0.927925
Target:  5'- uUUUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AAAUCAUGUAcUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.