miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8485 3' -40.7 NC_002169.1 + 42376 0.68 1
Target:  5'- -----cACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucaUGUacUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 10326 0.69 1
Target:  5'- ---cGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- aaauCAUGUACU--------AGAAACGaaAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 42453 0.7 0.999999
Target:  5'- --aAGUcaaACAcaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCA---UGUacUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 53091 0.7 0.999995
Target:  5'- ----aUACucaAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaaucAUGuacUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105322 0.71 0.999993
Target:  5'- --aAGUACAcaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUacUAgAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105690 0.71 0.99997
Target:  5'- ----aUACAcGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGuAG- -5'
8485 3' -40.7 NC_002169.1 + 105600 0.72 0.999958
Target:  5'- ----aUACAcaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUacUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11704 0.72 0.999921
Target:  5'- aUUUGGUugAUGAUCUUcauuugaggaUGaUUUCAUCg -3'
miRNA:   3'- -AAAUCAugUACUAGAA----------ACgAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 104956 0.73 0.999858
Target:  5'- -aUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAuGUacUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 41772 0.73 0.999812
Target:  5'- ----aUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGuaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 119325 0.73 0.99968
Target:  5'- -aUAG-AC--GAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCaUGuaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105039 0.73 0.99968
Target:  5'- -aUAuUGCAUcagccuacucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUcAUGUA----------CUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11281 0.75 0.998685
Target:  5'- aUUUAaUACAcaAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUcAUGUacUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105202 0.75 0.998011
Target:  5'- uUUUAaUACAcGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AAAUcAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 10520 0.76 0.995786
Target:  5'- -----cACAacGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaaucaUGUa-CUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105514 0.78 0.990502
Target:  5'- --cGGUACAUcAUgUUUGCUUUCAUCc -3'
miRNA:   3'- aaaUCAUGUAcUAgAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 10713 0.78 0.987305
Target:  5'- uUUUAGUACAcaAUgUUUGCUUUCAUCu -3'
miRNA:   3'- -AAAUCAUGUacUAgAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11761 0.8 0.961952
Target:  5'- ----aUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11173 0.83 0.913463
Target:  5'- ----aUGCAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 120230 0.83 0.913463
Target:  5'- ----aUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.