miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8487 3' -43.2 NC_002169.1 + 105690 0.67 0.999996
Target:  5'- ----aUACAcGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- agaucAUGUaCUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 42376 0.68 0.999992
Target:  5'- -----cACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucaUGUacUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 105407 0.68 0.999978
Target:  5'- cUUUAaUACAcGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AGAUcAUGUaCUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 41873 0.69 0.99997
Target:  5'- ----aUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- agaucAUGUaCUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 10326 0.69 0.99997
Target:  5'- ---cGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- agauCAUGUACU--------AGAAACGaaAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 32793 0.69 0.999958
Target:  5'- aCUAGUACGcUGAccgaUUUGCgucgUUUCGUCg -3'
miRNA:   3'- aGAUCAUGU-ACUag--AAACG----AAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 42453 0.7 0.999898
Target:  5'- --aAGUcaaACAcaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCA---UGUacUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 105322 0.71 0.999702
Target:  5'- --aAGUACAcaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUacUAgAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 105600 0.72 0.999044
Target:  5'- ----aUACAcaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGUacUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 104956 0.73 0.99785
Target:  5'- -aUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCAuGUacUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 41772 0.73 0.997406
Target:  5'- ----aUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGuaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 105039 0.73 0.996291
Target:  5'- -aUAuUGCAUcagccuacucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agAUcAUGUA----------CUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 119325 0.73 0.996291
Target:  5'- -aUAG-AC--GAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCaUGuaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 52662 0.75 0.987325
Target:  5'- uUUUAGUACAcGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUaCUAgAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 105145 0.76 0.978911
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- agaucaUGUACUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 52978 0.76 0.976276
Target:  5'- uUUUAGUACAccAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUacUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 105202 0.77 0.966932
Target:  5'- uUUUAaUACAcGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AGAUcAUGUaCUAGAAACGAAAGCAG- -5'
8487 3' -43.2 NC_002169.1 + 41999 0.78 0.950797
Target:  5'- --cAGUACAcGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- agaUCAUGUaCUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 52898 0.78 0.946062
Target:  5'- uUUUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AGAUCAUGUAcUAGAAACGAAAGcAG- -5'
8487 3' -43.2 NC_002169.1 + 71637 0.79 0.924193
Target:  5'- --cAGUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- agaUCAUGUaCUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.