miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8490 3' -41.4 NC_002169.1 + 127259 0.68 1
Target:  5'- aUAUGcacCACGAUCgcuucgUGCUcgUCGUCa -3'
miRNA:   3'- -AUAUuauGUGCUAGaa----ACGAa-AGCAG- -5'
8490 3' -41.4 NC_002169.1 + 22486 0.67 1
Target:  5'- -cUAcgGCGCGGUCg--GCgcaguauggUUCGUCg -3'
miRNA:   3'- auAUuaUGUGCUAGaaaCGa--------AAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 41053 0.67 1
Target:  5'- cGUAAUcgaAUACGGUCUUUGg---CGUCg -3'
miRNA:   3'- aUAUUA---UGUGCUAGAAACgaaaGCAG- -5'
8490 3' -41.4 NC_002169.1 + 45715 0.66 1
Target:  5'- aGUAucUGCGCGA-CUUggccgGCUaUCGUCg -3'
miRNA:   3'- aUAUu-AUGUGCUaGAAa----CGAaAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 126841 0.67 1
Target:  5'- aAUGAcGCGCGA-C-UUGCUUUCGcCg -3'
miRNA:   3'- aUAUUaUGUGCUaGaAACGAAAGCaG- -5'
8490 3' -41.4 NC_002169.1 + 129654 0.66 1
Target:  5'- gAUGGUgcACACGAUCUcgucGCgUUCGUUc -3'
miRNA:   3'- aUAUUA--UGUGCUAGAaa--CGaAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 10323 0.66 1
Target:  5'- aAUcGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- aUAuUAUGUGCU--------AGAAACGaaAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 59831 0.69 0.999999
Target:  5'- cAUGu--CGCGAUCgaugUUGCcguUUUCGUCg -3'
miRNA:   3'- aUAUuauGUGCUAGa---AACG---AAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 10711 0.69 0.999998
Target:  5'- -uUAGUACACaAUgUUUGCUUucaucuacgaUCGUCg -3'
miRNA:   3'- auAUUAUGUGcUAgAAACGAA----------AGCAG- -5'
8490 3' -41.4 NC_002169.1 + 31417 0.69 0.999998
Target:  5'- ---cGUGCACGAUCUcgucgaUGgUUUUGUCg -3'
miRNA:   3'- auauUAUGUGCUAGAa-----ACgAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 27556 0.7 0.999996
Target:  5'- gAUGAgauuUGCACGAUUg--GCgcgUCGUCa -3'
miRNA:   3'- aUAUU----AUGUGCUAGaaaCGaa-AGCAG- -5'
8490 3' -41.4 NC_002169.1 + 29673 0.7 0.999992
Target:  5'- -----aACGCGAUCggUUGCcUUUUGUCu -3'
miRNA:   3'- auauuaUGUGCUAGa-AACG-AAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11559 0.71 0.999942
Target:  5'- -----aACACcAUCUUUGUUUUUGUCa -3'
miRNA:   3'- auauuaUGUGcUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 104957 0.73 0.999757
Target:  5'- cAUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aUAUUAuGUgcUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 10520 0.74 0.999349
Target:  5'- -----cACaACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auauuaUG-UGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 52900 0.74 0.999349
Target:  5'- -uUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- auAUUAUGUGcUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 105322 0.78 0.982161
Target:  5'- --aAGUACACaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- auaUUAUGUGcUAgAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 105145 0.78 0.979782
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auauuaUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 11636 0.79 0.97433
Target:  5'- -cUAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAgAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 11283 0.79 0.971235
Target:  5'- -uUAAUACACaAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGcUAGAAACGAAAGcAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.