miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8490 5' -44.6 NC_002169.1 + 110273 0.66 0.999996
Target:  5'- gUGAUGAAcggcAGCGAAGAUuugacCGAGUGg-- -3'
miRNA:   3'- aGCUACUU----UCGUUUCUA-----GCUCAUgau -5'
8490 5' -44.6 NC_002169.1 + 84421 0.66 0.999996
Target:  5'- -gGAUGcGAGUucAGGAUCGAauGUACUAc -3'
miRNA:   3'- agCUACuUUCGu-UUCUAGCU--CAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 119482 0.66 0.999987
Target:  5'- -gGAcGAAAGCAAAGAUCGucUAUg- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCucAUGau -5'
8490 5' -44.6 NC_002169.1 + 35147 0.67 0.999982
Target:  5'- aCGAcuAGGGUGAGGAUCGAGcGCg- -3'
miRNA:   3'- aGCUacUUUCGUUUCUAGCUCaUGau -5'
8490 5' -44.6 NC_002169.1 + 53076 0.67 0.999982
Target:  5'- -gGAcGAAAGCAAAGAUCauGUAUUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 11204 0.67 0.999952
Target:  5'- -gGAcGAAAGCAAAGAUCauGUAUUAa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 118721 0.68 0.999885
Target:  5'- aCGGUGAccGUcGAGGUCGAGaGCa- -3'
miRNA:   3'- aGCUACUuuCGuUUCUAGCUCaUGau -5'
8490 5' -44.6 NC_002169.1 + 47294 0.68 0.999848
Target:  5'- cUGAUGuGGAGCAAAuGGUCGGGUGa-- -3'
miRNA:   3'- aGCUAC-UUUCGUUU-CUAGCUCAUgau -5'
8490 5' -44.6 NC_002169.1 + 64392 0.69 0.999671
Target:  5'- aCGAauUGaAAAGCAAAGGUUGcGUGCUc -3'
miRNA:   3'- aGCU--AC-UUUCGUUUCUAGCuCAUGAu -5'
8490 5' -44.6 NC_002169.1 + 85540 0.69 0.999391
Target:  5'- uUCGAgcgcucguauuuguuUGugGGCAAAGuGUCGAGUGCg- -3'
miRNA:   3'- -AGCU---------------ACuuUCGUUUC-UAGCUCAUGau -5'
8490 5' -44.6 NC_002169.1 + 105130 0.7 0.998732
Target:  5'- ----cGAAAGCAAAGAUCauGUACUAg -3'
miRNA:   3'- agcuaCUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 53156 0.72 0.995394
Target:  5'- -gGAcGAAAGCAAAGAUCauGUACUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 105115 0.72 0.995394
Target:  5'- -gGAcGAAAGCAAAGAUCauGUACUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 92206 0.72 0.995394
Target:  5'- gUUGAUGGAGGCcauugaAAAGAUCGAGgcCa- -3'
miRNA:   3'- -AGCUACUUUCG------UUUCUAGCUCauGau -5'
8490 5' -44.6 NC_002169.1 + 71670 0.72 0.992606
Target:  5'- -gGAcGAAAGCAAAGAUCauGUACUAg -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 52698 0.72 0.992606
Target:  5'- -gGAcGAAAGCAAAGAUCauGUACUAg -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 105376 0.73 0.988614
Target:  5'- gUCGAcGAucuuggacaaAAGCAAAGAUCGuGUAUUAa -3'
miRNA:   3'- -AGCUaCU----------UUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 11332 0.73 0.986965
Target:  5'- gUCGAcGAAAGCAAAGAUCG--UGCa- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCucAUGau -5'
8490 5' -44.6 NC_002169.1 + 104927 0.74 0.980904
Target:  5'- gUCGAcGAAAGCAAAGAUCauGUAUUGa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 10551 0.75 0.962839
Target:  5'- -aGAUGAAAGCAAAcAUUGuGUACUAa -3'
miRNA:   3'- agCUACUUUCGUUUcUAGCuCAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.