miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8491 5' -57.8 NC_002169.1 + 40184 0.66 0.802235
Target:  5'- aUGGCCaucaguguggugaUCGAucCCGUCAcguacaucaacauuaGCGUCGCCAa -3'
miRNA:   3'- aAUCGG-------------AGCU--GGCAGU---------------UGCGGCGGUg -5'
8491 5' -57.8 NC_002169.1 + 107698 0.66 0.799536
Target:  5'- -aAGUCUCGACCaucGUCGGCcaccaaUGCCGCg -3'
miRNA:   3'- aaUCGGAGCUGG---CAGUUGcg----GCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 55393 0.66 0.79044
Target:  5'- uUUGGCgUCGAgauauagugaaUCGUCGACGUCGCgGa -3'
miRNA:   3'- -AAUCGgAGCU-----------GGCAGUUGCGGCGgUg -5'
8491 5' -57.8 NC_002169.1 + 22362 0.66 0.79044
Target:  5'- -cGGCCagcacgugcCGGCCGgaaagauugcgcUCGGCGUCGCCAUg -3'
miRNA:   3'- aaUCGGa--------GCUGGC------------AGUUGCGGCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 128106 0.66 0.7812
Target:  5'- --cGCCgCcGCCGcCGcCGCCGCCGCc -3'
miRNA:   3'- aauCGGaGcUGGCaGUuGCGGCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 125102 0.66 0.771824
Target:  5'- --uGUCUCacacuCUGUCGcCGCCGCCGCc -3'
miRNA:   3'- aauCGGAGcu---GGCAGUuGCGGCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 116099 0.66 0.771824
Target:  5'- gUAGUCgaauaugucgCGGCCGUCu-CGCuUGCCGCg -3'
miRNA:   3'- aAUCGGa---------GCUGGCAGuuGCG-GCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 118741 0.66 0.771824
Target:  5'- -aGGCUcucaUCGAUCGggUCAACGgCGCCAa -3'
miRNA:   3'- aaUCGG----AGCUGGC--AGUUGCgGCGGUg -5'
8491 5' -57.8 NC_002169.1 + 91872 0.66 0.762322
Target:  5'- ----aCUUGACUGUCGacgacgACGCCGUCGCc -3'
miRNA:   3'- aaucgGAGCUGGCAGU------UGCGGCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 6223 0.66 0.762322
Target:  5'- gUAGUCgCcGCCGcCGcCGCCGCCGCc -3'
miRNA:   3'- aAUCGGaGcUGGCaGUuGCGGCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 38000 0.66 0.762322
Target:  5'- --cGgCUCGACUGUaCAACaaaGCCGCgGCa -3'
miRNA:   3'- aauCgGAGCUGGCA-GUUG---CGGCGgUG- -5'
8491 5' -57.8 NC_002169.1 + 118276 0.67 0.752703
Target:  5'- -gAGCCggCGGCguaaUCAAUGCCGCCGu -3'
miRNA:   3'- aaUCGGa-GCUGgc--AGUUGCGGCGGUg -5'
8491 5' -57.8 NC_002169.1 + 53443 0.67 0.74102
Target:  5'- -aAGCCggucgggaaacgCGGCCaaguaucagGUCGuCGCCGCCGCc -3'
miRNA:   3'- aaUCGGa-----------GCUGG---------CAGUuGCGGCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 48127 0.67 0.733153
Target:  5'- --uGUCUCauacaaaccGCCGUCGGCGCCGUCGu -3'
miRNA:   3'- aauCGGAGc--------UGGCAGUUGCGGCGGUg -5'
8491 5' -57.8 NC_002169.1 + 108888 0.67 0.733153
Target:  5'- --cGUCgUCG-UCGUCGcCGCCGCCGCc -3'
miRNA:   3'- aauCGG-AGCuGGCAGUuGCGGCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 36941 0.67 0.723239
Target:  5'- -cGGCUacgUGGCCGacuUCAACGCCGaCACg -3'
miRNA:   3'- aaUCGGa--GCUGGC---AGUUGCGGCgGUG- -5'
8491 5' -57.8 NC_002169.1 + 56990 0.68 0.682886
Target:  5'- --cGCCgUGGCCGcuuUgGACGCCGCCGg -3'
miRNA:   3'- aauCGGaGCUGGC---AgUUGCGGCGGUg -5'
8491 5' -57.8 NC_002169.1 + 120446 0.68 0.682886
Target:  5'- -aAGCC-CGACaccauauacguCGUCAACGuuGCCGa -3'
miRNA:   3'- aaUCGGaGCUG-----------GCAGUUGCggCGGUg -5'
8491 5' -57.8 NC_002169.1 + 110408 0.68 0.662418
Target:  5'- --cGCCcuuUUGGCCGUgAACGCCGCa-- -3'
miRNA:   3'- aauCGG---AGCUGGCAgUUGCGGCGgug -5'
8491 5' -57.8 NC_002169.1 + 100403 0.69 0.641852
Target:  5'- -cGGUaucgUUCaGACCGUCGGCGCUaaagGCCACg -3'
miRNA:   3'- aaUCG----GAG-CUGGCAGUUGCGG----CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.