miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8494 3' -51.4 NC_002169.1 + 12665 0.66 0.982298
Target:  5'- cGUCA----ACgCCGCCACCAgCCACaCAa -3'
miRNA:   3'- -CAGUuuuaUG-GGUGGUGGU-GGUG-GUa -5'
8494 3' -51.4 NC_002169.1 + 19400 0.66 0.982298
Target:  5'- gGUguGAAUuaACCCGCCAUCGCaucCCAUa -3'
miRNA:   3'- -CAguUUUA--UGGGUGGUGGUGgu-GGUA- -5'
8494 3' -51.4 NC_002169.1 + 118768 0.66 0.981444
Target:  5'- -cCAAAAU-CCCGacgacaacgacgaCGCCGCCGCCGUu -3'
miRNA:   3'- caGUUUUAuGGGUg------------GUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 73052 0.66 0.980104
Target:  5'- cGUCGAGGacCCCGCCACggacaaAUCGCCGa -3'
miRNA:   3'- -CAGUUUUauGGGUGGUGg-----UGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 124543 0.66 0.977714
Target:  5'- -aCGAcAUACUCACCAUCGaCGCCAUu -3'
miRNA:   3'- caGUUuUAUGGGUGGUGGUgGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 44523 0.66 0.977714
Target:  5'- aUCGAGAaaauuuugGCCUuuuUCGCCGCCGCCGa -3'
miRNA:   3'- cAGUUUUa-------UGGGu--GGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 78136 0.66 0.975118
Target:  5'- uUCGA---GCCCGCCGa-GCCGCCGUc -3'
miRNA:   3'- cAGUUuuaUGGGUGGUggUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 4269 0.66 0.975118
Target:  5'- -gCAAAauGUugUCGCCGUCGCCGCCGUc -3'
miRNA:   3'- caGUUU--UAugGGUGGUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 2934 0.66 0.975118
Target:  5'- cGUCGAGAcacgacucuugACCCACCACCuuGCacagACCAUa -3'
miRNA:   3'- -CAGUUUUa----------UGGGUGGUGG--UGg---UGGUA- -5'
8494 3' -51.4 NC_002169.1 + 82505 0.66 0.972308
Target:  5'- -cCGuAGUACCaaaaACaaCACCGCCACCAUa -3'
miRNA:   3'- caGUuUUAUGGg---UG--GUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 117645 0.67 0.969276
Target:  5'- -cCAA---GCCCguaaagaagacaACCGCCGCCGCCGc -3'
miRNA:   3'- caGUUuuaUGGG------------UGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 35162 0.67 0.958777
Target:  5'- aUCGAgcgcgcAAUACaacuaaguGCCACCGCCGCCAUg -3'
miRNA:   3'- cAGUU------UUAUGgg------UGGUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 110561 0.67 0.958777
Target:  5'- gGUCcGAAUGgUCGCCGCCGCgaACCAc -3'
miRNA:   3'- -CAGuUUUAUgGGUGGUGGUGg-UGGUa -5'
8494 3' -51.4 NC_002169.1 + 30317 0.68 0.950545
Target:  5'- uGUCGAcg-ACgCCGCCgcucacguuGCCGCCGCCGa -3'
miRNA:   3'- -CAGUUuuaUG-GGUGG---------UGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 110147 0.68 0.946045
Target:  5'- cGUgGAGcacAUGCCCGcCCugCACCugCAc -3'
miRNA:   3'- -CAgUUU---UAUGGGU-GGugGUGGugGUa -5'
8494 3' -51.4 NC_002169.1 + 92781 0.68 0.946045
Target:  5'- -gCAAAcguCCCAUCACCAUUGCCAa -3'
miRNA:   3'- caGUUUuauGGGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 46059 0.69 0.925409
Target:  5'- cGUCucGAUGCUguccucgccguCACCACCAUCAUCAUc -3'
miRNA:   3'- -CAGuuUUAUGG-----------GUGGUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 121269 0.69 0.925409
Target:  5'- -cCAAcAUGCCCACCagauacACgACCGCCGg -3'
miRNA:   3'- caGUUuUAUGGGUGG------UGgUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 67414 0.69 0.919585
Target:  5'- -cCGAAAacUCCACCGCCAUCACgAUg -3'
miRNA:   3'- caGUUUUauGGGUGGUGGUGGUGgUA- -5'
8494 3' -51.4 NC_002169.1 + 118358 0.69 0.913494
Target:  5'- uGUUuGAGUAaucaugaUCAUCACCACCACCAUc -3'
miRNA:   3'- -CAGuUUUAUg------GGUGGUGGUGGUGGUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.