miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8500 3' -42.1 NC_002169.1 + 118887 0.67 1
Target:  5'- uCGAUGAGAGCcuguAGAUcgGCcgugaauuguUGUGCUGAc -3'
miRNA:   3'- -GCUACUUUCGuu--UCUA--UG----------ACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 25146 0.66 1
Target:  5'- aCGGUGAAga-GAAGGUACUG-GCUAc -3'
miRNA:   3'- -GCUACUUucgUUUCUAUGACaUGAUu -5'
8500 3' -42.1 NC_002169.1 + 64392 0.66 1
Target:  5'- aCGAauUGaAAAGCAAAGGUugcguGCUcGUGCUGu -3'
miRNA:   3'- -GCU--AC-UUUCGUUUCUA-----UGA-CAUGAUu -5'
8500 3' -42.1 NC_002169.1 + 104869 0.66 1
Target:  5'- gGAcGAAAGCAAAGAUcgaguagGCUGaUGCa-- -3'
miRNA:   3'- gCUaCUUUCGUUUCUA-------UGAC-AUGauu -5'
8500 3' -42.1 NC_002169.1 + 11331 0.66 1
Target:  5'- uCGAcGAAAGCAAAGAU-C-GUGCa-- -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAuGaCAUGauu -5'
8500 3' -42.1 NC_002169.1 + 105355 0.67 1
Target:  5'- gGAUGAAAGCAAAcAUGaUGUACc-- -3'
miRNA:   3'- gCUACUUUCGUUUcUAUgACAUGauu -5'
8500 3' -42.1 NC_002169.1 + 119635 0.68 0.999997
Target:  5'- gGAcGAAAGCAAAGAUcgUGUACc-- -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGauu -5'
8500 3' -42.1 NC_002169.1 + 11096 0.68 0.999997
Target:  5'- gGAcGAAAGCAAAGAUcgUGUACc-- -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGauu -5'
8500 3' -42.1 NC_002169.1 + 52942 0.68 0.999997
Target:  5'- gGAcGAAAGCAAAGAUcgUGUACc-- -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGauu -5'
8500 3' -42.1 NC_002169.1 + 105481 0.69 0.999995
Target:  5'- gGAcGAAAGCAAAcAUugUGUACUu- -3'
miRNA:   3'- gCUaCUUUCGUUUcUAugACAUGAuu -5'
8500 3' -42.1 NC_002169.1 + 11604 0.71 0.999927
Target:  5'- gGAcGAAAGCAAAGAUcgUGUAUUAu -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUu -5'
8500 3' -42.1 NC_002169.1 + 42222 0.71 0.999927
Target:  5'- gGAcGAAAGCAAAGAUugUGUuugGAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAugaUU- -5'
8500 3' -42.1 NC_002169.1 + 11196 0.71 0.999827
Target:  5'- gGAcGAAAGCAAAGAU-CgaGUACUAGa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAuGa-CAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 120072 0.72 0.999518
Target:  5'- uCGAcGAAAGCAAAGAUcgUGUAUUAc -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAugACAUGAUu -5'
8500 3' -42.1 NC_002169.1 + 42291 0.73 0.999231
Target:  5'- gGAcGAAAGCAAAGAUugUGUuugACUu- -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACA---UGAuu -5'
8500 3' -42.1 NC_002169.1 + 11204 0.73 0.999231
Target:  5'- gGAcGAAAGCAAAGAUcaUGUAUUAAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 53076 0.73 0.999039
Target:  5'- gGAcGAAAGCAAAGAUcaUGUAUUGAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 52933 0.74 0.998201
Target:  5'- uCGAUGAAAGCAAAGAUugaGUAUg-- -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugaCAUGauu -5'
8500 3' -42.1 NC_002169.1 + 104926 0.75 0.995477
Target:  5'- uCGAcGAAAGCAAAGAUcaUGUAUUGAa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 11475 0.75 0.995477
Target:  5'- uCGAUGAAAGCAAAcAUcaUGUACUAGa -3'
miRNA:   3'- -GCUACUUUCGUUUcUAugACAUGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.