miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8505 5' -44.2 NC_002169.1 + 9601 0.66 0.999996
Target:  5'- aCGAUGggGGUAAugAaaaauucaaagUCGUGUGu-- -3'
miRNA:   3'- aGCUACuuUCGUUugU-----------AGCACAUgau -5'
8505 5' -44.2 NC_002169.1 + 121405 0.66 0.999996
Target:  5'- aUGAUGAcauuGGCAuaGGCGUCGUugugaauGUACUGc -3'
miRNA:   3'- aGCUACUu---UCGU--UUGUAGCA-------CAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 117283 0.66 0.999995
Target:  5'- uUUGAUGAGAuuccACAUCGUGUgGCUAu -3'
miRNA:   3'- -AGCUACUUUcguuUGUAGCACA-UGAU- -5'
8505 5' -44.2 NC_002169.1 + 80401 0.66 0.999994
Target:  5'- aCGAUGGguuucguGAGC-GGCAUCGUGaGCa- -3'
miRNA:   3'- aGCUACU-------UUCGuUUGUAGCACaUGau -5'
8505 5' -44.2 NC_002169.1 + 10880 0.66 0.999992
Target:  5'- gUCGAaGAucuuggacgAAGCAAAgAUCGaGUACUAg -3'
miRNA:   3'- -AGCUaCU---------UUCGUUUgUAGCaCAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 93450 0.67 0.999989
Target:  5'- gUCGAUGAAGGUcuGCAguaUGUGCa- -3'
miRNA:   3'- -AGCUACUUUCGuuUGUagcACAUGau -5'
8505 5' -44.2 NC_002169.1 + 115806 0.67 0.999984
Target:  5'- aUGAucuUGGAGGCGGACAaggcgguguugUUGUGUGCg- -3'
miRNA:   3'- aGCU---ACUUUCGUUUGU-----------AGCACAUGau -5'
8505 5' -44.2 NC_002169.1 + 97066 0.67 0.999978
Target:  5'- aUCGAcGAuc-CGAACGUUGUGUACa- -3'
miRNA:   3'- -AGCUaCUuucGUUUGUAGCACAUGau -5'
8505 5' -44.2 NC_002169.1 + 95572 0.68 0.999944
Target:  5'- gUCGAUGAGA-CcGGCGUCGUGUuuUGa -3'
miRNA:   3'- -AGCUACUUUcGuUUGUAGCACAugAU- -5'
8505 5' -44.2 NC_002169.1 + 105130 0.68 0.999899
Target:  5'- ----cGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- agcuaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 118888 0.69 0.999707
Target:  5'- aUCGAUGAGAGCcuguAgAUCGgccgugaauuguUGUGCUGa -3'
miRNA:   3'- -AGCUACUUUCGuu--UgUAGC------------ACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 105115 0.7 0.999399
Target:  5'- -gGAcGAAAGCAAAgAUCaUGUACUGa -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 41801 0.7 0.999399
Target:  5'- cUCGAUGAAcGCAAACAUUGaaUAUUGc -3'
miRNA:   3'- -AGCUACUUuCGUUUGUAGCacAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 53156 0.7 0.999399
Target:  5'- -gGAcGAAAGCAAAgAUCaUGUACUGa -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 52698 0.71 0.998843
Target:  5'- -gGAcGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 71670 0.71 0.998843
Target:  5'- -gGAcGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11332 0.71 0.9979
Target:  5'- gUCGAcGAAAGCAAAgAUCGUGcauuuCUGc -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGCACau---GAU- -5'
8505 5' -44.2 NC_002169.1 + 11196 0.72 0.996381
Target:  5'- -gGAcGAAAGCAAAgAUCGaGUACUAg -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGCaCAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 104927 0.72 0.995709
Target:  5'- gUCGAcGAAAGCAAAgAUCaUGUAUUGa -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 105376 0.73 0.994057
Target:  5'- gUCGAcGAucuuggacaaAAGCAAAgAUCGUGUAUUAa -3'
miRNA:   3'- -AGCUaCU----------UUCGUUUgUAGCACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.