miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8513 3' -43.5 NC_002169.1 + 39872 0.66 1
Target:  5'- uCUCUcaaAGU-CAUGAUCgugUUGCggUUGUg -3'
miRNA:   3'- -GAGA---UCAuGUACUAGa--AACGaaAGCA- -5'
8513 3' -43.5 NC_002169.1 + 104959 0.66 0.999999
Target:  5'- uUCaUAGU-CA--AUCUUUGCUUUCGUc -3'
miRNA:   3'- gAG-AUCAuGUacUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 105032 0.66 0.999999
Target:  5'- aUC-AGccUACucGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGaUC--AUGuaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 41868 0.66 0.999999
Target:  5'- aUUUcaUACAcGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAucAUGUaCUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 119322 0.67 0.999995
Target:  5'- uUCaUAG-AC--GAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAG-AUCaUGuaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 41767 0.68 0.999986
Target:  5'- gCUCca-UACucGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGaucAUGuaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 105202 0.71 0.999125
Target:  5'- uUUUAaUACAcGAUCUUUGCUUUUGUc -3'
miRNA:   3'- gAGAUcAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 11173 0.72 0.998016
Target:  5'- -----aUGCAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagaucAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 11761 0.72 0.998016
Target:  5'- -----aUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagaucAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 120235 0.73 0.997119
Target:  5'- uUgUAaUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAgAUcAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 105406 0.74 0.994311
Target:  5'- aCUUUAaUACAcGAUCUUUGCUUUCa- -3'
miRNA:   3'- -GAGAUcAUGUaCUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 105149 0.74 0.993342
Target:  5'- uUCgc--ACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGaucaUGUACUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 52662 0.74 0.991008
Target:  5'- uUUUAGUACAcGAUgUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUaCUAgAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 52978 0.75 0.982345
Target:  5'- uUUUAGUACAccAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUacUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 71635 0.78 0.943481
Target:  5'- uUC-AGUACAcGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGaUCAUGUaCUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 41997 0.78 0.943481
Target:  5'- uUC-AGUACAcGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGaUCAUGUaCUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 119518 0.79 0.921056
Target:  5'- uUUUAGUACAcGAUCUUUGCUUuuaUCGa -3'
miRNA:   3'- gAGAUCAUGUaCUAGAAACGAA---AGCa -5'
8513 3' -43.5 NC_002169.1 + 52898 0.79 0.908077
Target:  5'- uUUUAGUACAUcAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUAcUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 53233 0.82 0.807395
Target:  5'- -----aUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagaucAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 104769 0.82 0.807395
Target:  5'- -----aUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagaucAUGUACUAGAAACGAAAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.