miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8514 5' -42.5 NC_002169.1 + 26602 0.66 1
Target:  5'- cGGGCGugucGCGGAGcgcuacgauaGUCGUGUAUUu -3'
miRNA:   3'- aCCUGUuuu-CGUUUC----------UAGCACAUAAu -5'
8514 5' -42.5 NC_002169.1 + 37286 0.67 1
Target:  5'- cGGAuCGAcgGAGCAGGGAUCGaUGa---- -3'
miRNA:   3'- aCCU-GUU--UUCGUUUCUAGC-ACauaau -5'
8514 5' -42.5 NC_002169.1 + 64769 0.66 1
Target:  5'- uUGGGCGAcuuGGGCAucGGUCGUuUGUc- -3'
miRNA:   3'- -ACCUGUU---UUCGUuuCUAGCAcAUAau -5'
8514 5' -42.5 NC_002169.1 + 95036 0.66 1
Target:  5'- aUGGACGcGAGCAAcgagucGAUCuUGUGUUu -3'
miRNA:   3'- -ACCUGUuUUCGUUu-----CUAGcACAUAAu -5'
8514 5' -42.5 NC_002169.1 + 29549 0.67 0.999999
Target:  5'- gUGGACGAGAaCGAGGAcgaGUGUAa-- -3'
miRNA:   3'- -ACCUGUUUUcGUUUCUag-CACAUaau -5'
8514 5' -42.5 NC_002169.1 + 129762 0.68 0.999998
Target:  5'- uUGGugAcGAGCGGAuggacgcGAUUGUGUAUg- -3'
miRNA:   3'- -ACCugUuUUCGUUU-------CUAGCACAUAau -5'
8514 5' -42.5 NC_002169.1 + 10971 0.68 0.999996
Target:  5'- -cGACGAAA-CAAAGAUCaUGUAUUAa -3'
miRNA:   3'- acCUGUUUUcGUUUCUAGcACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 105128 0.69 0.999968
Target:  5'- --uACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- accUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 52823 0.7 0.99994
Target:  5'- -cGAUGAAAGCAAAcAUCGUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUcUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 104989 0.7 0.999891
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUGc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 52934 0.71 0.999856
Target:  5'- -cGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCaCAUAau -5'
8514 5' -42.5 NC_002169.1 + 42417 0.71 0.999753
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 42348 0.71 0.999753
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 10851 0.71 0.999753
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 119454 0.71 0.999753
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 104995 0.71 0.999753
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 53202 0.71 0.999753
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 41902 0.72 0.99959
Target:  5'- uUGGACGAAAGCAAA-AUCGaGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUcUAGCaCAUaau -5'
8514 5' -42.5 NC_002169.1 + 11730 0.73 0.997638
Target:  5'- -cGAUGAAAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGC-------------ACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 53062 0.74 0.996648
Target:  5'- uUGGAUGAAAGCAAAGAUgaUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAgcACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.