miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8516 5' -46.3 NC_002169.1 + 42938 0.66 0.999941
Target:  5'- --cGAGCGcuagCACGGCUu-GCGGCa -3'
miRNA:   3'- caaUUUGCuaa-GUGCCGGuuUGUCGc -5'
8516 5' -46.3 NC_002169.1 + 28576 0.66 0.999941
Target:  5'- --cAGAUGGUUCAUuacagugaacgaGGCCA-ACGGCa -3'
miRNA:   3'- caaUUUGCUAAGUG------------CCGGUuUGUCGc -5'
8516 5' -46.3 NC_002169.1 + 69840 0.66 0.999941
Target:  5'- -gUAGACcAUUCcguCGGCCucAAGCGGCa -3'
miRNA:   3'- caAUUUGcUAAGu--GCCGG--UUUGUCGc -5'
8516 5' -46.3 NC_002169.1 + 55231 0.66 0.999941
Target:  5'- ---cGACGAUUCACuauaucucgacGCCAAACuGGCGu -3'
miRNA:   3'- caauUUGCUAAGUGc----------CGGUUUG-UCGC- -5'
8516 5' -46.3 NC_002169.1 + 102104 0.66 0.999896
Target:  5'- uUUGGAauUGA--CGCGGCCGGAgAGCGc -3'
miRNA:   3'- cAAUUU--GCUaaGUGCCGGUUUgUCGC- -5'
8516 5' -46.3 NC_002169.1 + 87567 0.66 0.999896
Target:  5'- --cAAGCGcgUCgucuGCGGCCAGAUuGCc -3'
miRNA:   3'- caaUUUGCuaAG----UGCCGGUUUGuCGc -5'
8516 5' -46.3 NC_002169.1 + 118719 0.66 0.999864
Target:  5'- ---cAACaAUUCACGGCCGAucuACAGg- -3'
miRNA:   3'- caauUUGcUAAGUGCCGGUU---UGUCgc -5'
8516 5' -46.3 NC_002169.1 + 71881 0.66 0.999864
Target:  5'- --gAAACGAUcguaguCGGCCucGACAGUGg -3'
miRNA:   3'- caaUUUGCUAagu---GCCGGu-UUGUCGC- -5'
8516 5' -46.3 NC_002169.1 + 134602 0.66 0.999864
Target:  5'- ----uGCGcgUCGCucuGGCCAuucACGGCGa -3'
miRNA:   3'- caauuUGCuaAGUG---CCGGUu--UGUCGC- -5'
8516 5' -46.3 NC_002169.1 + 101708 0.66 0.999823
Target:  5'- aGUU--GCGAUUCaaacGCGGCCucgguucGCGGCa -3'
miRNA:   3'- -CAAuuUGCUAAG----UGCCGGuu-----UGUCGc -5'
8516 5' -46.3 NC_002169.1 + 112412 0.66 0.999818
Target:  5'- ---cGACGAagucaaacaUCACGGCUAcgccgagGGCAGCGg -3'
miRNA:   3'- caauUUGCUa--------AGUGCCGGU-------UUGUCGC- -5'
8516 5' -46.3 NC_002169.1 + 117083 0.67 0.999734
Target:  5'- aGUUGGuacACGAaaaaucgcaauccaUCAUGGCCGAAUAGCc -3'
miRNA:   3'- -CAAUU---UGCUa-------------AGUGCCGGUUUGUCGc -5'
8516 5' -46.3 NC_002169.1 + 36876 0.67 0.999707
Target:  5'- --cGGAUGucagccUCACGGCCAGAucguCAGCa -3'
miRNA:   3'- caaUUUGCua----AGUGCCGGUUU----GUCGc -5'
8516 5' -46.3 NC_002169.1 + 57150 0.67 0.999529
Target:  5'- ---cGGCGGcgUCcaaaGCGGCCAcGGCGGCGg -3'
miRNA:   3'- caauUUGCUa-AG----UGCCGGU-UUGUCGC- -5'
8516 5' -46.3 NC_002169.1 + 1326 0.67 0.999529
Target:  5'- --gAGACGAUg-ACGGCgGcGGCGGCGg -3'
miRNA:   3'- caaUUUGCUAagUGCCGgU-UUGUCGC- -5'
8516 5' -46.3 NC_002169.1 + 80094 0.68 0.999409
Target:  5'- uGUUGGACGGUauggUgGCGcGCUgcaaGAGCAGCGu -3'
miRNA:   3'- -CAAUUUGCUA----AgUGC-CGG----UUUGUCGC- -5'
8516 5' -46.3 NC_002169.1 + 75866 0.68 0.999263
Target:  5'- uGUUAGACGAcgUCgAUGGU--GACGGCGa -3'
miRNA:   3'- -CAAUUUGCUa-AG-UGCCGguUUGUCGC- -5'
8516 5' -46.3 NC_002169.1 + 80042 0.68 0.999263
Target:  5'- ---cGACGAUcuuuUCGCGGgCG-GCAGCGa -3'
miRNA:   3'- caauUUGCUA----AGUGCCgGUuUGUCGC- -5'
8516 5' -46.3 NC_002169.1 + 79778 0.68 0.999087
Target:  5'- --aGAACGGcgaUCAucUGGCCAGcgGCAGCGu -3'
miRNA:   3'- caaUUUGCUa--AGU--GCCGGUU--UGUCGC- -5'
8516 5' -46.3 NC_002169.1 + 51074 0.68 0.998599
Target:  5'- --gAGACGuUUUAUGGCCAauucgagGACGGCu -3'
miRNA:   3'- caaUUUGCuAAGUGCCGGU-------UUGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.