miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8517 3' -45 NC_002169.1 + 32431 0.66 0.999995
Target:  5'- -cGGCGACGCCGUgu-ACcGAGCUgucgCCg -3'
miRNA:   3'- ucUUGCUGUGGCGauuUGuUUUGA----GG- -5'
8517 3' -45 NC_002169.1 + 60375 0.69 0.999677
Target:  5'- gAGAucauCGACAUCGCcgccgcaaUGAGCAAAAUcgCCa -3'
miRNA:   3'- -UCUu---GCUGUGGCG--------AUUUGUUUUGa-GG- -5'
8517 3' -45 NC_002169.1 + 108283 0.72 0.992995
Target:  5'- cGAACGAaucgACCGCgcAACAAAaguaagaacgucGCUCCu -3'
miRNA:   3'- uCUUGCUg---UGGCGauUUGUUU------------UGAGG- -5'
8517 3' -45 NC_002169.1 + 108095 1.14 0.01647
Target:  5'- cAGAACGACACCGCUAAACAAAACUCCu -3'
miRNA:   3'- -UCUUGCUGUGGCGAUUUGUUUUGAGG- -5'
8517 3' -45 NC_002169.1 + 49690 0.66 0.999988
Target:  5'- -cGGCGACGCCGUUGAucugaaACAcguuuauguugagcaGAcGCUCCa -3'
miRNA:   3'- ucUUGCUGUGGCGAUU------UGU---------------UU-UGAGG- -5'
8517 3' -45 NC_002169.1 + 33813 0.66 0.999988
Target:  5'- --uACGACGCCGCuUgucgcuguagugguuGAGCGAGuagagcuGCUCCu -3'
miRNA:   3'- ucuUGCUGUGGCG-A---------------UUUGUUU-------UGAGG- -5'
8517 3' -45 NC_002169.1 + 58056 0.67 0.999981
Target:  5'- -cGACGACGCCGUc-GACAAuuUUCUc -3'
miRNA:   3'- ucUUGCUGUGGCGauUUGUUuuGAGG- -5'
8517 3' -45 NC_002169.1 + 69221 0.67 0.999974
Target:  5'- uAGAugGAU-CCGgUGAACGAGAgguuUUCCu -3'
miRNA:   3'- -UCUugCUGuGGCgAUUUGUUUU----GAGG- -5'
8517 3' -45 NC_002169.1 + 18357 0.67 0.999951
Target:  5'- -uGACGACACCgaugaGCUAGACAcaaAGAUUUg -3'
miRNA:   3'- ucUUGCUGUGG-----CGAUUUGU---UUUGAGg -5'
8517 3' -45 NC_002169.1 + 88852 0.69 0.999747
Target:  5'- gAGAGCGGUGCagGCgagAAACGauGAACUCCa -3'
miRNA:   3'- -UCUUGCUGUGg-CGa--UUUGU--UUUGAGG- -5'
8517 3' -45 NC_002169.1 + 84563 0.68 0.999849
Target:  5'- cAGcACGACACCGCgc--CGGAAUUUg -3'
miRNA:   3'- -UCuUGCUGUGGCGauuuGUUUUGAGg -5'
8517 3' -45 NC_002169.1 + 48336 0.67 0.999964
Target:  5'- --cGCGAUGCCGCUAucuCGAu-UUCCg -3'
miRNA:   3'- ucuUGCUGUGGCGAUuu-GUUuuGAGG- -5'
8517 3' -45 NC_002169.1 + 51929 0.66 0.999993
Target:  5'- uGGACGGCA-CGCUGAuuGAGACgcgaaguggCCa -3'
miRNA:   3'- uCUUGCUGUgGCGAUUugUUUUGa--------GG- -5'
8517 3' -45 NC_002169.1 + 37824 0.68 0.999804
Target:  5'- uGAACGACACCGUgccucGGAUgcAAUUCa -3'
miRNA:   3'- uCUUGCUGUGGCGa----UUUGuuUUGAGg -5'
8517 3' -45 NC_002169.1 + 63008 0.66 0.999993
Target:  5'- -cGACGACGaCGa-AGACGAAGCUCUa -3'
miRNA:   3'- ucUUGCUGUgGCgaUUUGUUUUGAGG- -5'
8517 3' -45 NC_002169.1 + 114536 0.67 0.999974
Target:  5'- gAGGGCGACGCUGUcGAuggccaggcACAAugUUCCc -3'
miRNA:   3'- -UCUUGCUGUGGCGaUU---------UGUUuuGAGG- -5'
8517 3' -45 NC_002169.1 + 2943 0.69 0.999747
Target:  5'- cGAGCG-UGCCGUcgAGACAcGACUCUu -3'
miRNA:   3'- uCUUGCuGUGGCGa-UUUGUuUUGAGG- -5'
8517 3' -45 NC_002169.1 + 122924 0.69 0.99959
Target:  5'- -cGACGACGCCGaacaaaUGAGCAcuaguaaaAAACUCg -3'
miRNA:   3'- ucUUGCUGUGGCg-----AUUUGU--------UUUGAGg -5'
8517 3' -45 NC_002169.1 + 22144 0.66 0.999993
Target:  5'- -uGugGACGCCGUc--AUAGAACUuCCa -3'
miRNA:   3'- ucUugCUGUGGCGauuUGUUUUGA-GG- -5'
8517 3' -45 NC_002169.1 + 39532 0.67 0.999981
Target:  5'- -cGACGGCGgUGCcgaucggcaauaUGAGCGAcGCUCCg -3'
miRNA:   3'- ucUUGCUGUgGCG------------AUUUGUUuUGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.