Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8520 | 3' | -48.7 | NC_002169.1 | + | 96908 | 0.66 | 0.998967 |
Target: 5'- gCAGCG-UCGuCGACAccGUCggCAGCGUCGa -3' miRNA: 3'- -GUUGCaAGU-GUUGU--CGGa-GUUGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 30806 | 0.66 | 0.998739 |
Target: 5'- gCAGCa---ACGGCAGCCUCAGCa--- -3' miRNA: 3'- -GUUGcaagUGUUGUCGGAGUUGcagc -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 78493 | 0.66 | 0.998739 |
Target: 5'- --uCGUcgACAACAGCaauaaaaUCAACGUCa -3' miRNA: 3'- guuGCAagUGUUGUCGg------AGUUGCAGc -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 44120 | 0.66 | 0.998739 |
Target: 5'- aCGACGUUCGaAACGuGCCgUCucACGUCa -3' miRNA: 3'- -GUUGCAAGUgUUGU-CGG-AGu-UGCAGc -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 34940 | 0.66 | 0.998471 |
Target: 5'- -uGCGUcucgaUUACAACAGCCUCGcuuUCGa -3' miRNA: 3'- guUGCA-----AGUGUUGUCGGAGUugcAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 12563 | 0.66 | 0.998155 |
Target: 5'- ---aGUUaCGCcGCuGCCuUCAACGUCGg -3' miRNA: 3'- guugCAA-GUGuUGuCGG-AGUUGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 18932 | 0.66 | 0.998155 |
Target: 5'- aCAACGaUCACGGCAGUgU---CGUCGa -3' miRNA: 3'- -GUUGCaAGUGUUGUCGgAguuGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 107282 | 0.66 | 0.997786 |
Target: 5'- aGACGUgauggCcCAGCAGCUgcgCAACGUUc -3' miRNA: 3'- gUUGCAa----GuGUUGUCGGa--GUUGCAGc -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 95276 | 0.67 | 0.997358 |
Target: 5'- uCGGCGUUguCGACGGgCUgaaCGACGUCc -3' miRNA: 3'- -GUUGCAAguGUUGUCgGA---GUUGCAGc -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 129802 | 0.67 | 0.997358 |
Target: 5'- gCGACGcgacCACAAUGGCgaCAAUGUCGc -3' miRNA: 3'- -GUUGCaa--GUGUUGUCGgaGUUGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 15997 | 0.67 | 0.996863 |
Target: 5'- uGACGcaUUGCGGCAGCgUCGGCGgCGg -3' miRNA: 3'- gUUGCa-AGUGUUGUCGgAGUUGCaGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 6380 | 0.67 | 0.996863 |
Target: 5'- gCGGCGgcgGCGGCGGCgaCUaCAGCGUCGa -3' miRNA: 3'- -GUUGCaagUGUUGUCG--GA-GUUGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 6940 | 0.67 | 0.996863 |
Target: 5'- uCGAUGUcgACAuCGGCaUCGACGUCGg -3' miRNA: 3'- -GUUGCAagUGUuGUCGgAGUUGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 58980 | 0.67 | 0.99653 |
Target: 5'- uCAACuaucugCGCGACAGCCUgcgcgcgcucaccgaCGACGUUGa -3' miRNA: 3'- -GUUGcaa---GUGUUGUCGGA---------------GUUGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 133807 | 0.67 | 0.995641 |
Target: 5'- --cCGUcaACAAguGCgUCGACGUCGa -3' miRNA: 3'- guuGCAagUGUUguCGgAGUUGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 111650 | 0.67 | 0.995641 |
Target: 5'- aCGACGcgaUCGCAACGGCagaauCGUCGa -3' miRNA: 3'- -GUUGCa--AGUGUUGUCGgaguuGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 82709 | 0.67 | 0.994898 |
Target: 5'- gAACGccgcCGCAgccGCAGCUUgCGACGUCGu -3' miRNA: 3'- gUUGCaa--GUGU---UGUCGGA-GUUGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 46049 | 0.68 | 0.994056 |
Target: 5'- gAACGagCgACGGCuGUCUCGGCGUCu -3' miRNA: 3'- gUUGCaaG-UGUUGuCGGAGUUGCAGc -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 57164 | 0.68 | 0.993105 |
Target: 5'- aAACGUUC-Cu-CAGCCggCGGCGUCc -3' miRNA: 3'- gUUGCAAGuGuuGUCGGa-GUUGCAGc -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 71817 | 0.68 | 0.993105 |
Target: 5'- uGGCGUgaucggUCACGACGGCCUCGuagauUGUa- -3' miRNA: 3'- gUUGCA------AGUGUUGUCGGAGUu----GCAgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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