miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8530 5' -60.2 NC_002169.1 + 135371 0.81 0.104045
Target:  5'- uUUGUCGCCGcCGUCGUCGcCGUUGUCa -3'
miRNA:   3'- -AACAGCGGCaGCGGCGGCaGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 135172 0.67 0.629887
Target:  5'- --aUCGUCGUUGU--UCGUCGUCGUCa -3'
miRNA:   3'- aacAGCGGCAGCGgcGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 135097 0.72 0.355736
Target:  5'- -cGUCGUCGUCGUCcUCGUCcUCGUCg -3'
miRNA:   3'- aaCAGCGGCAGCGGcGGCAGcAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 133162 0.74 0.284647
Target:  5'- gUUGUUGCCGaguaucugCGCCGUCGUCGcCGUg -3'
miRNA:   3'- -AACAGCGGCa-------GCGGCGGCAGCaGCAg -5'
8530 5' -60.2 NC_002169.1 + 132678 0.67 0.639889
Target:  5'- ---aCGCaaacaaCGUUGUCGUCGUCGUCGUUc -3'
miRNA:   3'- aacaGCG------GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 128850 0.73 0.325874
Target:  5'- -cGUCGCCGUUGaCGUuccucuCGUCGUCGUUg -3'
miRNA:   3'- aaCAGCGGCAGCgGCG------GCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 128106 0.69 0.502417
Target:  5'- -cGcCGCCGcCGCCGCCGcCGcCGcCu -3'
miRNA:   3'- aaCaGCGGCaGCGGCGGCaGCaGCaG- -5'
8530 5' -60.2 NC_002169.1 + 127528 0.76 0.199713
Target:  5'- --uUCGUCGUCGCuagauccgcuuuCGUCGUCGUCGUCg -3'
miRNA:   3'- aacAGCGGCAGCG------------GCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 127241 0.67 0.659869
Target:  5'- aUGUgGCUGguaaagaUGCCGCUGUUGUCGa- -3'
miRNA:   3'- aACAgCGGCa------GCGGCGGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 125579 0.66 0.689658
Target:  5'- --uUCGCgCGUCGCCGCCacUCgGUCGa- -3'
miRNA:   3'- aacAGCG-GCAGCGGCGGc-AG-CAGCag -5'
8530 5' -60.2 NC_002169.1 + 125091 0.77 0.17242
Target:  5'- cUGUCGCCGcCGCCGCCGcCGcCGcCc -3'
miRNA:   3'- aACAGCGGCaGCGGCGGCaGCaGCaG- -5'
8530 5' -60.2 NC_002169.1 + 124046 0.83 0.078234
Target:  5'- --aUCGUCGUCGUCGUCGUCGUCGUUa -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 123690 0.76 0.214724
Target:  5'- cUGUCGUCGUCGUCGUCGUCuUUGUUc -3'
miRNA:   3'- aACAGCGGCAGCGGCGGCAGcAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 122159 0.66 0.699507
Target:  5'- -cGUCGUCGUugaCGCUauuGCCGUCGcCGcCa -3'
miRNA:   3'- aaCAGCGGCA---GCGG---CGGCAGCaGCaG- -5'
8530 5' -60.2 NC_002169.1 + 120977 0.84 0.066861
Target:  5'- --aUCGUCGUCGCCGUCGUCGUUGUUg -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 118934 0.69 0.531076
Target:  5'- -cGgCGgCGUCGUCGuuGUCGUCGg- -3'
miRNA:   3'- aaCaGCgGCAGCGGCggCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 118662 0.83 0.078234
Target:  5'- -cGUCGUCGUCGUCGUCGUCGuaUCGUCu -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGCAGC--AGCAG- -5'
8530 5' -60.2 NC_002169.1 + 117729 0.82 0.080302
Target:  5'- -cGUCGUCGUCGCCGCCGccuucUUGUCGUUu -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGC-----AGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 117692 0.69 0.502417
Target:  5'- aUGcgCGCCGcUC-CCGUCGUCGUCGa- -3'
miRNA:   3'- aACa-GCGGC-AGcGGCGGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 112781 0.66 0.689658
Target:  5'- aUGUCGgCGUCGUCGuaGUCGguUCGa- -3'
miRNA:   3'- aACAGCgGCAGCGGCggCAGC--AGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.