Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8535 | 3' | -44.8 | NC_002169.1 | + | 105690 | 0.66 | 0.999996 |
Target: 5'- ----aUACaCGAUCUUUGCUUUC-UCg -3' miRNA: 3'- agaucAUGaGCUAGAAACGAAAGcAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 122762 | 0.66 | 0.999996 |
Target: 5'- aCUAGUGCUCa---UUUGUUcggcgUCGUCg -3' miRNA: 3'- aGAUCAUGAGcuagAAACGAa----AGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 108376 | 0.66 | 0.999994 |
Target: 5'- aCU-GUGC-CGAUU--UGUUUUCGUCg -3' miRNA: 3'- aGAuCAUGaGCUAGaaACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 32793 | 0.66 | 0.999992 |
Target: 5'- aCUAGUACgcugacCGAUUUgcGUcgUUUCGUCg -3' miRNA: 3'- aGAUCAUGa-----GCUAGAaaCG--AAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 53091 | 0.66 | 0.999988 |
Target: 5'- ----aUACUCaAUCUUUGCUUUCaUCg -3' miRNA: 3'- agaucAUGAGcUAGAAACGAAAGcAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 105600 | 0.66 | 0.999983 |
Target: 5'- ----aUACaCaAUCUUUGCUUUCGUCg -3' miRNA: 3'- agaucAUGaGcUAGAAACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 105407 | 0.67 | 0.999976 |
Target: 5'- cUUUAaUACaCGAUCUUUGCUUUCaUCc -3' miRNA: 3'- -AGAUcAUGaGCUAGAAACGAAAGcAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 41873 | 0.67 | 0.999968 |
Target: 5'- ----aUACaCGAUCUUUGCUUUCaUCg -3' miRNA: 3'- agaucAUGaGCUAGAAACGAAAGcAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 104956 | 0.68 | 0.999818 |
Target: 5'- ----aUAgUCaAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaucAUgAGcUAGAAACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 52978 | 0.69 | 0.999511 |
Target: 5'- uUUUAGUACaCcAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGaGcUAGAAACGAAAGcAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 52898 | 0.7 | 0.999048 |
Target: 5'- uUUUAGUACaUC-AUCUUUGCUUUCaUCc -3' miRNA: 3'- -AGAUCAUG-AGcUAGAAACGAAAGcAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 52662 | 0.73 | 0.987794 |
Target: 5'- uUUUAGUACaCGAUgUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGaGCUAgAAACGAAAGcAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 105202 | 0.75 | 0.968351 |
Target: 5'- uUUUAaUACaCGAUCUUUGCUUUUGUCc -3' miRNA: 3'- -AGAUcAUGaGCUAGAAACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 53233 | 0.75 | 0.961187 |
Target: 5'- ----aUACaUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaucAUGaGCUAGAAACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 119325 | 0.76 | 0.957213 |
Target: 5'- ----aUAgaCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaucAUgaGCUAGAAACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 41999 | 0.76 | 0.95297 |
Target: 5'- --cAGUACaCGAUCUUUGCUUUCaUCu -3' miRNA: 3'- agaUCAUGaGCUAGAAACGAAAGcAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 11638 | 0.77 | 0.933219 |
Target: 5'- uUCUAGUACaUGAUgUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGaGCUAgAAACGAAAGcAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 71637 | 0.77 | 0.92757 |
Target: 5'- --cAGUACaCGAUCUUUGCUUUCaUCg -3' miRNA: 3'- agaUCAUGaGCUAGAAACGAAAGcAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 11366 | 0.77 | 0.915415 |
Target: 5'- uUUUAaUACaUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUcAUGaGCUAGAAACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 104769 | 0.77 | 0.915415 |
Target: 5'- ----aUACaUGAUCUUUGCUUUCGUCa -3' miRNA: 3'- agaucAUGaGCUAGAAACGAAAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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