miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8537 5' -44.4 NC_002169.1 + 127002 0.66 0.999997
Target:  5'- gUCGGCGAAAGCAAGucgcgcgucauuuucGAUCAauUG-ACg- -3'
miRNA:   3'- -AGCUGCUUUCGUUU---------------CUAGU--ACaUGau -5'
8537 5' -44.4 NC_002169.1 + 127910 0.66 0.999997
Target:  5'- gCGGCGAagAAGCAuugaaGGGAUCGUGgugaUGCg- -3'
miRNA:   3'- aGCUGCU--UUCGU-----UUCUAGUAC----AUGau -5'
8537 5' -44.4 NC_002169.1 + 99937 0.66 0.999993
Target:  5'- aUUGACGcGAGGCGGcgcAGGUCGUgGUAUUGa -3'
miRNA:   3'- -AGCUGC-UUUCGUU---UCUAGUA-CAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 1863 0.66 0.99999
Target:  5'- cCGGCGgcGGCAAAGAUUAUc-GCUc -3'
miRNA:   3'- aGCUGCuuUCGUUUCUAGUAcaUGAu -5'
8537 5' -44.4 NC_002169.1 + 4197 0.67 0.999986
Target:  5'- gCGGCGGAGGCGAAGGacuuggugaUgGUGUAa-- -3'
miRNA:   3'- aGCUGCUUUCGUUUCU---------AgUACAUgau -5'
8537 5' -44.4 NC_002169.1 + 36267 0.67 0.999972
Target:  5'- aUCGACGcgauacuGCAAAGAcaGUGUGCg- -3'
miRNA:   3'- -AGCUGCuuu----CGUUUCUagUACAUGau -5'
8537 5' -44.4 NC_002169.1 + 43984 0.67 0.999962
Target:  5'- gUCGuCGAAAGUAAAGA-CGUGcACg- -3'
miRNA:   3'- -AGCuGCUUUCGUUUCUaGUACaUGau -5'
8537 5' -44.4 NC_002169.1 + 112785 0.67 0.999962
Target:  5'- aUCGACGAcGGCAAuaauaGGAUCAU-UGCc- -3'
miRNA:   3'- -AGCUGCUuUCGUU-----UCUAGUAcAUGau -5'
8537 5' -44.4 NC_002169.1 + 105355 0.68 0.999948
Target:  5'- -gGAUGAAAGCAAAcAUgAUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUcUAgUACAUGau -5'
8537 5' -44.4 NC_002169.1 + 53494 0.68 0.999837
Target:  5'- aUCGACGggGGUguGGAGAUCGUa----- -3'
miRNA:   3'- -AGCUGCuuUCG--UUUCUAGUAcaugau -5'
8537 5' -44.4 NC_002169.1 + 24549 0.69 0.999553
Target:  5'- cUCGACGuAAGCGAAGAUgaUAUGUugaACa- -3'
miRNA:   3'- -AGCUGCuUUCGUUUCUA--GUACA---UGau -5'
8537 5' -44.4 NC_002169.1 + 129825 0.71 0.997597
Target:  5'- uUCGAcugaaCGAAcGCGacGAGAUCGUGUGCa- -3'
miRNA:   3'- -AGCU-----GCUUuCGU--UUCUAGUACAUGau -5'
8537 5' -44.4 NC_002169.1 + 37283 0.72 0.996556
Target:  5'- aUCGACG-GAGCAGGGAUCgAUG-ACg- -3'
miRNA:   3'- -AGCUGCuUUCGUUUCUAG-UACaUGau -5'
8537 5' -44.4 NC_002169.1 + 32962 0.72 0.996556
Target:  5'- uUCGACGAAAcgacGCAAAucGGUCAgcGUACUAg -3'
miRNA:   3'- -AGCUGCUUU----CGUUU--CUAGUa-CAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 26639 0.72 0.994324
Target:  5'- cUCGGCGAGGGCAaAAGG--GUGUACg- -3'
miRNA:   3'- -AGCUGCUUUCGU-UUCUagUACAUGau -5'
8537 5' -44.4 NC_002169.1 + 104799 0.72 0.993362
Target:  5'- -gGACGAAAGCAAAGAUUg---ACUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGuacaUGAU- -5'
8537 5' -44.4 NC_002169.1 + 41904 0.74 0.982473
Target:  5'- -gGACGAAAGCAAA-AUCGaGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUcUAGUaCAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 118888 0.75 0.972014
Target:  5'- aUCGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCUGa -3'
miRNA:   3'- -AGCUGCUUUCGuu--UCUAGU------------ACAUGAU- -5'
8537 5' -44.4 NC_002169.1 + 80180 0.76 0.948886
Target:  5'- gUCGAUGAcguuguuuauuaAAGCGuuGAUCAUGUGCa- -3'
miRNA:   3'- -AGCUGCU------------UUCGUuuCUAGUACAUGau -5'
8537 5' -44.4 NC_002169.1 + 105481 0.77 0.938968
Target:  5'- -gGACGAAAGCAAAcAUUGUGUACUu -3'
miRNA:   3'- agCUGCUUUCGUUUcUAGUACAUGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.