miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8538 5' -42.9 NC_002169.1 + 130276 0.66 1
Target:  5'- -uGACGAGAGCAAucaauacGGUCAucaugguguuUGUGUUGa -3'
miRNA:   3'- acCUGCUUUCGUUu------CUAGU----------ACAUAAU- -5'
8538 5' -42.9 NC_002169.1 + 64769 0.66 0.999999
Target:  5'- uUGGGCGAcuuGGGCAucGGUCGUuUGUc- -3'
miRNA:   3'- -ACCUGCU---UUCGUuuCUAGUAcAUAau -5'
8538 5' -42.9 NC_002169.1 + 37286 0.68 0.999995
Target:  5'- cGGAuCGAcgGAGCAGGGAUCgAUGa---- -3'
miRNA:   3'- aCCU-GCU--UUCGUUUCUAG-UACauaau -5'
8538 5' -42.9 NC_002169.1 + 14374 0.68 0.999995
Target:  5'- gUGaGACGcGAAGaCAGGGA-CAUGUAUUAu -3'
miRNA:   3'- -AC-CUGC-UUUC-GUUUCUaGUACAUAAU- -5'
8538 5' -42.9 NC_002169.1 + 29549 0.68 0.999993
Target:  5'- gUGGACGAGAaCGAGGAcgaGUGUAa-- -3'
miRNA:   3'- -ACCUGCUUUcGUUUCUag-UACAUaau -5'
8538 5' -42.9 NC_002169.1 + 1188 0.68 0.99999
Target:  5'- cGGGCGAGAGCGGAGuuUUAcGUuUUAa -3'
miRNA:   3'- aCCUGCUUUCGUUUCu-AGUaCAuAAU- -5'
8538 5' -42.9 NC_002169.1 + 95036 0.69 0.999973
Target:  5'- aUGGACGcGAGCAAcgagucGAUCuUGUGUUu -3'
miRNA:   3'- -ACCUGCuUUCGUUu-----CUAGuACAUAAu -5'
8538 5' -42.9 NC_002169.1 + 101920 0.69 0.999949
Target:  5'- cGGACGAAAGCGugccGAUCAa------ -3'
miRNA:   3'- aCCUGCUUUCGUuu--CUAGUacauaau -5'
8538 5' -42.9 NC_002169.1 + 52823 0.72 0.999269
Target:  5'- -cGAUGAAAGCAAAcAUCGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 52934 0.72 0.999087
Target:  5'- -cGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUaCAUAau -5'
8538 5' -42.9 NC_002169.1 + 11476 0.72 0.998291
Target:  5'- -cGAUGAAAGCAAAcAUCAUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 41902 0.73 0.99792
Target:  5'- uUGGACGAAAGCAAA-AUCGaGUAc-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGUaCAUaau -5'
8538 5' -42.9 NC_002169.1 + 119356 0.73 0.996974
Target:  5'- -cGAUaAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGcUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 105353 0.73 0.996382
Target:  5'- uUGGAUGAAAGCAAAcAUgAUGUAc-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAgUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 10976 0.76 0.983606
Target:  5'- -cGACGAAAGCAAAcAUCGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 11730 0.77 0.969932
Target:  5'- -cGAUGAAAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGU-------------ACAUAAU- -5'
8538 5' -42.9 NC_002169.1 + 10677 0.77 0.966858
Target:  5'- -cGAUGAAAGCAAAGAUCGuUGUGg-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGU-ACAUaau -5'
8538 5' -42.9 NC_002169.1 + 52817 0.78 0.950511
Target:  5'- -cGAUGAAAGCAAAGAUgGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAgUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 104797 0.79 0.917195
Target:  5'- uUGGACGAAAGCAAAGAUUgacuAUGa---- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAG----UACauaau -5'
8538 5' -42.9 NC_002169.1 + 105483 0.8 0.910588
Target:  5'- uUGGACGAAAGCAAAcAUUGUGUAc-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGUACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.