miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8540 3' -43.4 NC_002169.1 + 104956 0.66 0.999999
Target:  5'- ----aUAgUCaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUgAGcUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 105514 0.67 0.999997
Target:  5'- --cGGUACaUC-AUgUUUGCUUUCAUCc -3'
miRNA:   3'- agaUCAUG-AGcUAgAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 105690 0.68 0.99999
Target:  5'- ----aUACaCGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGuAG- -5'
8540 3' -43.4 NC_002169.1 + 11281 0.68 0.99999
Target:  5'- aUUUAaUACaCaAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUcAUGaGcUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 10713 0.71 0.999544
Target:  5'- uUUUAGUACaCaAUgUUUGCUUUCAUCu -3'
miRNA:   3'- -AGAUCAUGaGcUAgAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 105202 0.72 0.998884
Target:  5'- uUUUAaUACaCGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AGAUcAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 53233 0.74 0.994178
Target:  5'- ----aUACaUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 119325 0.74 0.99319
Target:  5'- ----aUAgaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUgaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 105145 0.74 0.992072
Target:  5'- -----cACaUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- agaucaUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 10524 0.75 0.984143
Target:  5'- --------aCGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- agaucaugaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11366 0.76 0.979667
Target:  5'- uUUUAaUACaUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUcAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 104769 0.76 0.979667
Target:  5'- ----aUACaUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11761 0.76 0.977106
Target:  5'- ----aUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11132 0.78 0.9476
Target:  5'- gUUUAaUACaUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUcAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11173 0.78 0.942675
Target:  5'- ----aUGCaCGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 120230 0.78 0.942675
Target:  5'- ----aUACaCGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 53091 0.78 0.937459
Target:  5'- ----aUACUCaAUCUUUGCUUUCAUCg -3'
miRNA:   3'- agaucAUGAGcUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 105407 0.79 0.926143
Target:  5'- cUUUAaUACaCGAUCUUUGCUUUCAUCc -3'
miRNA:   3'- -AGAUcAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 41873 0.79 0.920042
Target:  5'- ----aUACaCGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 52978 0.81 0.843402
Target:  5'- uUUUAGUACaCcAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGaGcUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.