miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8553 3' -45.1 NC_002169.1 + 42423 0.66 0.999976
Target:  5'- gAUCgucGAUGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGaacCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 10845 0.66 0.999976
Target:  5'- gAUCgucGAUGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGaacCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 29546 0.66 0.999976
Target:  5'- uUCgUGGACGAGAaCGAGGAcgaGUGUa -3'
miRNA:   3'- uAGaACCUGCUUUcGUUUCUaa-CACA- -5'
8553 3' -45.1 NC_002169.1 + 53208 0.66 0.999976
Target:  5'- gAUCgucGAUGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGaacCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 52829 0.66 0.999955
Target:  5'- gAUCUUcGAUGAAAGCAAAcAUcGUGUa -3'
miRNA:   3'- -UAGAAcCUGCUUUCGUUUcUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 127904 0.66 0.999939
Target:  5'- uGUCUUGcGGCGAagAAGCAuugaaGGGAUcGUGg -3'
miRNA:   3'- -UAGAAC-CUGCU--UUCGU-----UUCUAaCACa -5'
8553 3' -45.1 NC_002169.1 + 119350 0.68 0.999757
Target:  5'- aAUCUUcGAUaAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGAAcCUGcUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 52928 0.69 0.998775
Target:  5'- gAUCcucGAUGAAAGCAAAGAUUGaGUa -3'
miRNA:   3'- -UAGaacCUGCUUUCGUUUCUAACaCA- -5'
8553 3' -45.1 NC_002169.1 + 10545 0.69 0.998775
Target:  5'- gAUCguaGAUGAAAGCAAAcAUUGUGUa -3'
miRNA:   3'- -UAGaacCUGCUUUCGUUUcUAACACA- -5'
8553 3' -45.1 NC_002169.1 + 42158 0.69 0.998499
Target:  5'- -----aGAUGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- uagaacCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 53288 0.7 0.997785
Target:  5'- gAUCgucGACGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGaacCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 104931 0.7 0.997785
Target:  5'- gAUCgucGACGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGaacCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 10683 0.71 0.992742
Target:  5'- gAUCgucGAUGAAAGCAAAGAUcguUGUGg -3'
miRNA:   3'- -UAGaacCUGCUUUCGUUUCUA---ACACa -5'
8553 3' -45.1 NC_002169.1 + 71801 0.71 0.992742
Target:  5'- gAUCcucGAUGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGaacCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 42035 0.71 0.992742
Target:  5'- gAUCcucGAUGAAAGCAAAGAUcGUGUa -3'
miRNA:   3'- -UAGaacCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 52811 0.71 0.992742
Target:  5'- gAUCcucGAUGAAAGCAAAGAUgGUGUa -3'
miRNA:   3'- -UAGaacCUGCUUUCGUUUCUAaCACA- -5'
8553 3' -45.1 NC_002169.1 + 119448 0.72 0.988784
Target:  5'- gAUCUUcGAUGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGAAcCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 105001 0.72 0.988784
Target:  5'- gAUCUUcGAUGAAAGCAAAGAUcaUGUa- -3'
miRNA:   3'- -UAGAAcCUGCUUUCGUUUCUA--ACAca -5'
8553 3' -45.1 NC_002169.1 + 11336 0.73 0.976052
Target:  5'- gAUCgucGACGAAAGCAAAGAUcGUGc -3'
miRNA:   3'- -UAGaacCUGCUUUCGUUUCUAaCACa -5'
8553 3' -45.1 NC_002169.1 + 105349 0.74 0.970063
Target:  5'- gAUCUUGGAUGAAAGCAAAcAUgaUGUa -3'
miRNA:   3'- -UAGAACCUGCUUUCGUUUcUAacACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.