miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8568 3' -44.4 NC_002169.1 + 42376 0.66 0.999991
Target:  5'- -----cACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aagucaUGUacUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 105407 0.67 0.999974
Target:  5'- cUUUAaUACAcGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AAGUcAUGUaCUAGAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 42451 0.68 0.999796
Target:  5'- gUCAaacACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aAGUca-UGUacUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 10324 0.68 0.999796
Target:  5'- aUC-GUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- aAGuCAUGUACU--------AGAAACGaaAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 105322 0.69 0.999659
Target:  5'- --aAGUACAcaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- aagUCAUGUacUAgAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 105516 0.7 0.998674
Target:  5'- gUCGGUACAUcAUgUUUGCUUUCaUCc -3'
miRNA:   3'- aAGUCAUGUAcUAgAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 104956 0.7 0.998674
Target:  5'- -aUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaGUCAuGUacUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 41869 0.72 0.995156
Target:  5'- uUUCA-UACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAGUcAUGUaCUAGAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 41768 0.72 0.993321
Target:  5'- cUCcaUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aAGucAUGuaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 11570 0.72 0.992215
Target:  5'- -cUAGUACucGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaGUCAUGuaCUAGAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 52662 0.73 0.986266
Target:  5'- uUUUAGUACAcGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- -AAGUCAUGUaCUAgAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 119321 0.74 0.982216
Target:  5'- uUUCA-UAgAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUcAUgUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 52978 0.74 0.974542
Target:  5'- uUUUAGUACAccAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAGUCAUGUacUAGAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 105150 0.75 0.971515
Target:  5'- uUUCGc-ACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAGUcaUGUACUAGAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 105604 0.75 0.971515
Target:  5'- uUUCA-UACAcaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAGUcAUGUacUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 105202 0.75 0.964702
Target:  5'- uUUUAaUACAcGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AAGUcAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 52898 0.76 0.942882
Target:  5'- uUUUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AAGUCAUGUAcUAGAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 11761 0.78 0.900032
Target:  5'- ----aUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aagucAUGUaCUAGAAACGAAAGCAG- -5'
8568 3' -44.4 NC_002169.1 + 119518 0.79 0.869147
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- -AAGUCAUGUaCUAGAAACGAAAGcAG- -5'
8568 3' -44.4 NC_002169.1 + 11639 0.79 0.834027
Target:  5'- aUUCuAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- -AAG-UCAUGUACUAgAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.