miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8569 3' -39.4 NC_002169.1 + 105322 0.67 1
Target:  5'- --aAGUACACaAUgUUUGCUUUcGUCc -3'
miRNA:   3'- aaaUUAUGUGcUAgAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 105145 0.71 1
Target:  5'- -----cACAUGAUCUUUGCUUUcaUCg -3'
miRNA:   3'- aaauuaUGUGCUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 42447 0.69 1
Target:  5'- -----aACACaAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaauuaUGUGcUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 42378 0.69 1
Target:  5'- -----aACACaAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaauuaUGUGcUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 52898 0.7 1
Target:  5'- uUUUAGUACAUcAUCUUUGCUUUc--- -3'
miRNA:   3'- -AAAUUAUGUGcUAGAAACGAAAacag -5'
8569 3' -39.4 NC_002169.1 + 11636 0.72 0.999999
Target:  5'- -cUAGUACAUGAUgUUUGCUUUcaUCg -3'
miRNA:   3'- aaAUUAUGUGCUAgAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 31417 0.73 0.999979
Target:  5'- ---cGUGCACGAUCUcgucgaUGgUUUUGUCg -3'
miRNA:   3'- aaauUAUGUGCUAGAa-----ACgAAAACAG- -5'
8569 3' -39.4 NC_002169.1 + 29673 0.74 0.999924
Target:  5'- -----aACGCGAUCggUUGCcUUUUGUCu -3'
miRNA:   3'- aaauuaUGUGCUAGa-AACG-AAAACAG- -5'
8569 3' -39.4 NC_002169.1 + 52978 0.74 0.999924
Target:  5'- uUUUAGUACACcAUCUUUGCUUUcaUCg -3'
miRNA:   3'- -AAAUUAUGUGcUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 11570 0.75 0.999897
Target:  5'- -cUAGUACuCGAUCUUUGCUUUcaUCg -3'
miRNA:   3'- aaAUUAUGuGCUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 11281 0.75 0.999897
Target:  5'- aUUUAAUACACaAUCUUUGCUUUcaUCg -3'
miRNA:   3'- -AAAUUAUGUGcUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 105026 0.75 0.999861
Target:  5'- ----cUACuCGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaauuAUGuGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 105601 0.76 0.999478
Target:  5'- ---cAUACACaAUCUUUGCUUUcGUCg -3'
miRNA:   3'- aaauUAUGUGcUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 11563 0.76 0.999336
Target:  5'- cUUGA-ACACcAUCUUUGUUUUUGUCa -3'
miRNA:   3'- aAAUUaUGUGcUAGAAACGAAAACAG- -5'
8569 3' -39.4 NC_002169.1 + 41771 0.77 0.998949
Target:  5'- ---cAUACuCGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaauUAUGuGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 119324 0.79 0.994981
Target:  5'- ---cAUAgACGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaauUAUgUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 52662 0.79 0.994981
Target:  5'- uUUUAGUACACGAUgUUUGCUUUcaUCg -3'
miRNA:   3'- -AAAUUAUGUGCUAgAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 41872 0.8 0.991809
Target:  5'- ---cAUACACGAUCUUUGCUUUcaUCg -3'
miRNA:   3'- aaauUAUGUGCUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 53042 0.82 0.972428
Target:  5'- -cUAGUACAUGAUCUUUGCUUUcaUCg -3'
miRNA:   3'- aaAUUAUGUGCUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 42188 0.82 0.969089
Target:  5'- -gUAGUACAUGAUCUUUGCUUUcaUCg -3'
miRNA:   3'- aaAUUAUGUGCUAGAAACGAAAacAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.