miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8570 5' -42.1 NC_002169.1 + 83426 0.66 1
Target:  5'- aUCGAUGAAAG---GGAU-GUGUAUUu -3'
miRNA:   3'- -AGCUACUUUCguuUCUAgCACAUAAu -5'
8570 5' -42.1 NC_002169.1 + 10880 0.67 1
Target:  5'- gUCGAaGAucuuggacgAAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- -AGCUaCU---------UUCGUUUCUAGC-------------ACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 129825 0.66 1
Target:  5'- uUCGAcUGAAcgaacGCGacGAGAUCGUGUGc-- -3'
miRNA:   3'- -AGCU-ACUUu----CGU--UUCUAGCACAUaau -5'
8570 5' -42.1 NC_002169.1 + 129761 0.67 1
Target:  5'- gUUGGUGAcGAGCGGAuggacgcGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUACU-UUCGUUU-------CUAGCACAUAau -5'
8570 5' -42.1 NC_002169.1 + 48879 0.68 0.999999
Target:  5'- -aGAUGAGGGa--GGAUUGUGUGUc- -3'
miRNA:   3'- agCUACUUUCguuUCUAGCACAUAau -5'
8570 5' -42.1 NC_002169.1 + 105130 0.68 0.999999
Target:  5'- ----cGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- agcuaCUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 10969 0.69 0.99999
Target:  5'- uUCGAcGAAA-CAAAGAUCaUGUAUUAa -3'
miRNA:   3'- -AGCUaCUUUcGUUUCUAGcACAUAAU- -5'
8570 5' -42.1 NC_002169.1 + 9601 0.7 0.999973
Target:  5'- aCGAUGggGGUAAuGAaaaauucaaagUCGUGUGUc- -3'
miRNA:   3'- aGCUACuuUCGUUuCU-----------AGCACAUAau -5'
8570 5' -42.1 NC_002169.1 + 105115 0.71 0.999949
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 52698 0.71 0.999949
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 53156 0.71 0.999949
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 71670 0.71 0.999949
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 11196 0.72 0.999721
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCaCAUaau -5'
8570 5' -42.1 NC_002169.1 + 104869 0.73 0.999419
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUAg-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCaCAUaau -5'
8570 5' -42.1 NC_002169.1 + 119482 0.73 0.999269
Target:  5'- -gGAcGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCAcAUAau -5'
8570 5' -42.1 NC_002169.1 + 53060 0.73 0.999269
Target:  5'- -gGAUGAAAGCAAAGAUgaUGUAc-- -3'
miRNA:   3'- agCUACUUUCGUUUCUAgcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 11474 0.74 0.998291
Target:  5'- gUCGAUGAAAGCAAAcAUCaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAGcACAUaau -5'
8570 5' -42.1 NC_002169.1 + 118888 0.74 0.99792
Target:  5'- aUCGAUGAGAGCcuguAGAUCGgccGUGa-- -3'
miRNA:   3'- -AGCUACUUUCGuu--UCUAGCa--CAUaau -5'
8570 5' -42.1 NC_002169.1 + 42222 0.75 0.996382
Target:  5'- -gGAcGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAuaau -5'
8570 5' -42.1 NC_002169.1 + 42291 0.75 0.996382
Target:  5'- -gGAcGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAuaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.