miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8571 5' -44.7 NC_002169.1 + 60182 0.66 0.999996
Target:  5'- aGUACACuguGG-ACAaCGUUGUCGAAAg -3'
miRNA:   3'- -CGUGUGu--UCaUGUaGCAGUAGCUUUa -5'
8571 5' -44.7 NC_002169.1 + 1951 0.66 0.999996
Target:  5'- cGC-CGCcgauGGUGuCGUUGUCAUCGAc-- -3'
miRNA:   3'- -CGuGUGu---UCAU-GUAGCAGUAGCUuua -5'
8571 5' -44.7 NC_002169.1 + 41298 0.66 0.999994
Target:  5'- aCACGCAGGgggagucgAUGUCGUUugcgGUCGAGAg -3'
miRNA:   3'- cGUGUGUUCa-------UGUAGCAG----UAGCUUUa -5'
8571 5' -44.7 NC_002169.1 + 91710 0.66 0.999994
Target:  5'- ---gGCGAcgGCGUCGUCGUCGAc-- -3'
miRNA:   3'- cgugUGUUcaUGUAGCAGUAGCUuua -5'
8571 5' -44.7 NC_002169.1 + 6384 0.66 0.999991
Target:  5'- uCACcaGCGGGaACGUCGUCAacagcaUCGAGAUc -3'
miRNA:   3'- cGUG--UGUUCaUGUAGCAGU------AGCUUUA- -5'
8571 5' -44.7 NC_002169.1 + 124053 0.66 0.999991
Target:  5'- aUACACAAucGU-CGUCGUCGUCGu--- -3'
miRNA:   3'- cGUGUGUU--CAuGUAGCAGUAGCuuua -5'
8571 5' -44.7 NC_002169.1 + 112479 0.66 0.999987
Target:  5'- aCGCGCAAauGUGCAagGgCGUCGAGAUu -3'
miRNA:   3'- cGUGUGUU--CAUGUagCaGUAGCUUUA- -5'
8571 5' -44.7 NC_002169.1 + 72127 0.66 0.999987
Target:  5'- uGCGCuacguCAAGUACAagcaCGUCAagaccgUCGAAGUc -3'
miRNA:   3'- -CGUGu----GUUCAUGUa---GCAGU------AGCUUUA- -5'
8571 5' -44.7 NC_002169.1 + 49330 0.67 0.999981
Target:  5'- uGUACACAauaucGGUAucggcgcCAUCGUCGUCGu--- -3'
miRNA:   3'- -CGUGUGU-----UCAU-------GUAGCAGUAGCuuua -5'
8571 5' -44.7 NC_002169.1 + 107721 0.67 0.999974
Target:  5'- gGCGauaGCGAcgGCAUCGUCAUCGc--- -3'
miRNA:   3'- -CGUg--UGUUcaUGUAGCAGUAGCuuua -5'
8571 5' -44.7 NC_002169.1 + 9274 0.67 0.999974
Target:  5'- --cUACAGuaAUAUCGUCGUCGAAGa -3'
miRNA:   3'- cguGUGUUcaUGUAGCAGUAGCUUUa -5'
8571 5' -44.7 NC_002169.1 + 59716 0.67 0.999965
Target:  5'- gGUACAUuaaUGCGUCGUUGUCGAu-- -3'
miRNA:   3'- -CGUGUGuucAUGUAGCAGUAGCUuua -5'
8571 5' -44.7 NC_002169.1 + 62420 0.67 0.999965
Target:  5'- gGCAUGCAAucGUACucuUCaGUCAUCGAu-- -3'
miRNA:   3'- -CGUGUGUU--CAUGu--AG-CAGUAGCUuua -5'
8571 5' -44.7 NC_002169.1 + 104678 0.67 0.999948
Target:  5'- aGCGCGCAuGUACAcgguccucugagagUUGUUGUCGAu-- -3'
miRNA:   3'- -CGUGUGUuCAUGU--------------AGCAGUAGCUuua -5'
8571 5' -44.7 NC_002169.1 + 85783 0.68 0.999936
Target:  5'- gGCGCGCAAG-GCAUCcacgaUUAUCGAAc- -3'
miRNA:   3'- -CGUGUGUUCaUGUAGc----AGUAGCUUua -5'
8571 5' -44.7 NC_002169.1 + 52466 0.68 0.999914
Target:  5'- uGCACgACAAGUACAauuuugaucaUCG-CGUCGGu-- -3'
miRNA:   3'- -CGUG-UGUUCAUGU----------AGCaGUAGCUuua -5'
8571 5' -44.7 NC_002169.1 + 74314 0.68 0.999886
Target:  5'- gGCAgGCAacuacaauauaaAG-GCGUCGUCGUCGAc-- -3'
miRNA:   3'- -CGUgUGU------------UCaUGUAGCAGUAGCUuua -5'
8571 5' -44.7 NC_002169.1 + 108455 0.68 0.99985
Target:  5'- uGUACGCcAGcgaaUACGUCGUCAcCGAGGa -3'
miRNA:   3'- -CGUGUGuUC----AUGUAGCAGUaGCUUUa -5'
8571 5' -44.7 NC_002169.1 + 98481 0.68 0.99985
Target:  5'- uCAUACGuuuUAUAUCGUCGUCGAc-- -3'
miRNA:   3'- cGUGUGUuc-AUGUAGCAGUAGCUuua -5'
8571 5' -44.7 NC_002169.1 + 101738 0.68 0.99985
Target:  5'- gGCACGCuaaauauuuGcACGUCGUCAUUGAu-- -3'
miRNA:   3'- -CGUGUGuu-------CaUGUAGCAGUAGCUuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.