Results 1 - 20 of 60 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 168900 | 0.68 | 1 |
Target: 5'- aGGCGUGUuuccauACGCGCCAUaaacagcUGCu -3' miRNA: 3'- -CCGUAUAuuuuguUGUGUGGUAa------ACG- -5' |
|||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 57815 | 0.66 | 1 |
Target: 5'- cGGCAgAUGAGACuuuuuuGGCACAUg--UUGCu -3' miRNA: 3'- -CCGUaUAUUUUG------UUGUGUGguaAACG- -5' |
|||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 167144 | 0.72 | 1 |
Target: 5'- gGGCugcuaAUGUuacGGCAGCACGCCAgucGCa -3' miRNA: 3'- -CCG-----UAUAuu-UUGUUGUGUGGUaaaCG- -5' |
|||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 173114 | 0.7 | 1 |
Target: 5'- aGGCGccaaAAAAUuGCGCGCCAUUguuugGCg -3' miRNA: 3'- -CCGUaua-UUUUGuUGUGUGGUAAa----CG- -5' |
|||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 168151 | 0.69 | 1 |
Target: 5'- cGGCGg--GAGACAGCuucCCGUggUGCa -3' miRNA: 3'- -CCGUauaUUUUGUUGuguGGUAa-ACG- -5' |
|||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 156094 | 0.69 | 1 |
Target: 5'- gGGCGguaacgAUGAAACAauguuAUACugCAUUcGCa -3' miRNA: 3'- -CCGUa-----UAUUUUGU-----UGUGugGUAAaCG- -5' |
|||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 2933 | 0.69 | 1 |
Target: 5'- gGGCGUAUAuAGCGcaaGCGCGCagg--GCu -3' miRNA: 3'- -CCGUAUAUuUUGU---UGUGUGguaaaCG- -5' |
|||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 49250 | 0.69 | 1 |
Target: 5'- aGCuuggGUAuuGCAGCucgucauugaACGCCAUUUGUg -3' miRNA: 3'- cCGua--UAUuuUGUUG----------UGUGGUAAACG- -5' |
|||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 21596 | 0.69 | 1 |
Target: 5'- aGGCcuuaguuUAGAACGAguaGCCAUUUGCu -3' miRNA: 3'- -CCGuau----AUUUUGUUgugUGGUAAACG- -5' |
|||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 146244 | 0.68 | 1 |
Target: 5'- cGGCAUGU---GCAccccCACCAggUGCa -3' miRNA: 3'- -CCGUAUAuuuUGUugu-GUGGUaaACG- -5' |
|||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 15255 | 0.68 | 1 |
Target: 5'- uGGCAUuaGUGGGGCGAUAUGgCAg--GCa -3' miRNA: 3'- -CCGUA--UAUUUUGUUGUGUgGUaaaCG- -5' |
|||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 86346 | 0.66 | 1 |
Target: 5'- gGGCAUAUAGGACAgGCAUguauaguCCG--UGUa -3' miRNA: 3'- -CCGUAUAUUUUGU-UGUGu------GGUaaACG- -5' |
|||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 866 | 0.67 | 1 |
Target: 5'- cGCGUGUGGGA--GCgACGCCGUccGCg -3' miRNA: 3'- cCGUAUAUUUUguUG-UGUGGUAaaCG- -5' |
|||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 20374 | 0.67 | 1 |
Target: 5'- aGGCAaGUAAuaaAACACAUCua-UGCa -3' miRNA: 3'- -CCGUaUAUUuugUUGUGUGGuaaACG- -5' |
|||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 145023 | 0.67 | 1 |
Target: 5'- aGGCGUGgAGGAgGACGC-CCAcguggGCg -3' miRNA: 3'- -CCGUAUaUUUUgUUGUGuGGUaaa--CG- -5' |
|||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 97050 | 0.67 | 1 |
Target: 5'- cGGCGc-UAAAGCGAUAgcgGCCAcUUGCa -3' miRNA: 3'- -CCGUauAUUUUGUUGUg--UGGUaAACG- -5' |
|||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 163121 | 0.66 | 1 |
Target: 5'- gGGCAUGUcuGAUccuucauGACugGCCAagagGCg -3' miRNA: 3'- -CCGUAUAuuUUG-------UUGugUGGUaaa-CG- -5' |
|||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 20479 | 0.66 | 1 |
Target: 5'- aGGCAcAUAAuaaAACACAUCua-UGCa -3' miRNA: 3'- -CCGUaUAUUuugUUGUGUGGuaaACG- -5' |
|||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 170245 | 0.66 | 1 |
Target: 5'- gGGUgaGUAUAAAACAacgauagACACAUCAUcgGg -3' miRNA: 3'- -CCG--UAUAUUUUGU-------UGUGUGGUAaaCg -5' |
|||||||
8675 | 3' | -39.6 | NC_002229.2 | + | 103620 | 0.66 | 1 |
Target: 5'- gGGCGUuggcauACAACGCugCAUg--- -3' miRNA: 3'- -CCGUAuauuu-UGUUGUGugGUAaacg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home