Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8730 | 5' | -49.8 | NC_002331.1 | + | 155022 | 0.66 | 0.998942 |
Target: 5'- cUGCGaaGUACC-AUUGGuCUGAUugACUa -3' miRNA: 3'- -ACGCa-CAUGGuUAGCC-GAUUGugUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 2735 | 0.66 | 0.998942 |
Target: 5'- cGCGUccACCAucuUUGGUuguuUAGCACACa -3' miRNA: 3'- aCGCAcaUGGUu--AGCCG----AUUGUGUGg -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 21939 | 0.66 | 0.998942 |
Target: 5'- aGCGUGUACCGcauuaugGUUGGUguuuuaggguuCGCCa -3' miRNA: 3'- aCGCACAUGGU-------UAGCCGauugu------GUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 108798 | 0.66 | 0.998716 |
Target: 5'- cUGaCGUGUACCA----GCUGACGCAa- -3' miRNA: 3'- -AC-GCACAUGGUuagcCGAUUGUGUgg -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 62815 | 0.66 | 0.99845 |
Target: 5'- gGCGUGcgGCgAguuuuuGUUGGC-GAUACACCa -3' miRNA: 3'- aCGCACa-UGgU------UAGCCGaUUGUGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 110625 | 0.66 | 0.998138 |
Target: 5'- cGCGUGUA--AAUCGuugGAUACACCa -3' miRNA: 3'- aCGCACAUggUUAGCcgaUUGUGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 52341 | 0.66 | 0.998138 |
Target: 5'- uUGCGUuaACCAaauGUCGGCguugauGC-CGCCc -3' miRNA: 3'- -ACGCAcaUGGU---UAGCCGau----UGuGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 43016 | 0.66 | 0.998138 |
Target: 5'- cGC---UGCUggUCGGCcGGCACGCUc -3' miRNA: 3'- aCGcacAUGGuuAGCCGaUUGUGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 149883 | 0.66 | 0.998138 |
Target: 5'- aGCGaaacaguuUGUACCGAcgacaUCGaCUAcgcGCGCACCa -3' miRNA: 3'- aCGC--------ACAUGGUU-----AGCcGAU---UGUGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 52544 | 0.67 | 0.997357 |
Target: 5'- cUGUGUucggGUGCCAAUUuGCUGguACAUACUg -3' miRNA: 3'- -ACGCA----CAUGGUUAGcCGAU--UGUGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 151339 | 0.67 | 0.997357 |
Target: 5'- cGaCGUGUcCCAAgUGGCUGGCcaACCg -3' miRNA: 3'- aC-GCACAuGGUUaGCCGAUUGugUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 149290 | 0.67 | 0.996873 |
Target: 5'- gUGgGUGUAUUAAUCaaaGCUGGCGCcauCCu -3' miRNA: 3'- -ACgCACAUGGUUAGc--CGAUUGUGu--GG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 66252 | 0.67 | 0.996768 |
Target: 5'- cGCGUGggcagcagguugACCAAgc-GCUAcCGCACCg -3' miRNA: 3'- aCGCACa-----------UGGUUagcCGAUuGUGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 145724 | 0.67 | 0.996319 |
Target: 5'- --aGUGaUACCAAUCGGUgcGCGguCCc -3' miRNA: 3'- acgCAC-AUGGUUAGCCGauUGUguGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 51049 | 0.67 | 0.995687 |
Target: 5'- gGUGUGcACCAccuguUCGGCUguguaaGACuCGCCg -3' miRNA: 3'- aCGCACaUGGUu----AGCCGA------UUGuGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 86565 | 0.68 | 0.993241 |
Target: 5'- cGCGaaaugGUGgUAAUCGGUUGA-GCGCCg -3' miRNA: 3'- aCGCa----CAUgGUUAGCCGAUUgUGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 65153 | 0.68 | 0.993241 |
Target: 5'- uUG-GUGUGCCAG-CGcGCgugacgugcGACGCACCg -3' miRNA: 3'- -ACgCACAUGGUUaGC-CGa--------UUGUGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 152420 | 0.68 | 0.993241 |
Target: 5'- aGCGUGcACCAcaacgcCGGCcggAACGCgACCg -3' miRNA: 3'- aCGCACaUGGUua----GCCGa--UUGUG-UGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 99089 | 0.68 | 0.992215 |
Target: 5'- uUGUGcccaauuuuuUGUGCuCGGcagCGGCUGACaACACCa -3' miRNA: 3'- -ACGC----------ACAUG-GUUa--GCCGAUUG-UGUGG- -5' |
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8730 | 5' | -49.8 | NC_002331.1 | + | 155207 | 0.69 | 0.98838 |
Target: 5'- aUGcCGU-UACCGAUCaGCUGAUGCugCa -3' miRNA: 3'- -AC-GCAcAUGGUUAGcCGAUUGUGugG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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