miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8792 5' -56.6 NC_002484.1 + 26588 0.66 0.694884
Target:  5'- cGCUGcCGCCGC-UCGGccagcAGCGCg -3'
miRNA:   3'- -CGGCuGCGGCGuGGCCuuuacUCGCG- -5'
8792 5' -56.6 NC_002484.1 + 34279 0.66 0.694884
Target:  5'- cGCCGACGaaGCGCUuGAuuacuacaAGCGCa -3'
miRNA:   3'- -CGGCUGCggCGUGGcCUuuac----UCGCG- -5'
8792 5' -56.6 NC_002484.1 + 17525 0.66 0.673517
Target:  5'- cGCCGGCGUaggaCGacggaGCUGGAGGcGcGCGCg -3'
miRNA:   3'- -CGGCUGCG----GCg----UGGCCUUUaCuCGCG- -5'
8792 5' -56.6 NC_002484.1 + 33031 0.66 0.673517
Target:  5'- aCUGGCGUgagCGCgGCUGcGAGGUGAGCGa -3'
miRNA:   3'- cGGCUGCG---GCG-UGGC-CUUUACUCGCg -5'
8792 5' -56.6 NC_002484.1 + 16949 0.66 0.673517
Target:  5'- gGCCGGCGaaCCGUugCuGuaguUGAGCGUc -3'
miRNA:   3'- -CGGCUGC--GGCGugGcCuuu-ACUCGCG- -5'
8792 5' -56.6 NC_002484.1 + 32554 0.66 0.672444
Target:  5'- uGCuCGcCGCCGCGCCcggcaaGGAGguaggucAUGAGUGa -3'
miRNA:   3'- -CG-GCuGCGGCGUGG------CCUU-------UACUCGCg -5'
8792 5' -56.6 NC_002484.1 + 47850 0.66 0.650922
Target:  5'- cGuuGGCGCCGCgauaccaaauuugGCUGGugcGAUucGCGCg -3'
miRNA:   3'- -CggCUGCGGCG-------------UGGCCu--UUAcuCGCG- -5'
8792 5' -56.6 NC_002484.1 + 35823 0.67 0.630412
Target:  5'- uUCGAUGCgGCACUGGcacggcuuaccAAGgcucgcGAGCGCg -3'
miRNA:   3'- cGGCUGCGgCGUGGCC-----------UUUa-----CUCGCG- -5'
8792 5' -56.6 NC_002484.1 + 8074 0.67 0.598063
Target:  5'- aCCGG-GCuCGCACCGGAAAgcuuGuCGCa -3'
miRNA:   3'- cGGCUgCG-GCGUGGCCUUUacu-C-GCG- -5'
8792 5' -56.6 NC_002484.1 + 33148 0.67 0.598063
Target:  5'- aGCaGGCGgaGCgGCCGGAGGUGguGGCGUa -3'
miRNA:   3'- -CGgCUGCggCG-UGGCCUUUAC--UCGCG- -5'
8792 5' -56.6 NC_002484.1 + 28817 0.67 0.591616
Target:  5'- cGCCGAUGCCauGCuaaagGCCaGGAaggaaggagguggggAAUGAGCGa -3'
miRNA:   3'- -CGGCUGCGG--CG-----UGG-CCU---------------UUACUCGCg -5'
8792 5' -56.6 NC_002484.1 + 36608 0.67 0.587325
Target:  5'- cGCCGGCGgcaUGC-CCGGGGAau-GCGCc -3'
miRNA:   3'- -CGGCUGCg--GCGuGGCCUUUacuCGCG- -5'
8792 5' -56.6 NC_002484.1 + 34004 0.68 0.57342
Target:  5'- aGCCcagGGCGCCGaaggcguucuggucUAcCCGGAAGUGGGUGa -3'
miRNA:   3'- -CGG---CUGCGGC--------------GU-GGCCUUUACUCGCg -5'
8792 5' -56.6 NC_002484.1 + 36857 0.68 0.565964
Target:  5'- gGCCGcCGCUgaGCGCCGGGAAcUGGaauuGCGa -3'
miRNA:   3'- -CGGCuGCGG--CGUGGCCUUU-ACU----CGCg -5'
8792 5' -56.6 NC_002484.1 + 51854 0.68 0.565964
Target:  5'- gGUCGGCGauggccuuCCGCGCCGGcu-UG-GCGUg -3'
miRNA:   3'- -CGGCUGC--------GGCGUGGCCuuuACuCGCG- -5'
8792 5' -56.6 NC_002484.1 + 4887 0.68 0.564901
Target:  5'- aGCCaccagGGCGCCGCcagaGCCgucgauGGAGGUgauggccGAGCGCg -3'
miRNA:   3'- -CGG-----CUGCGGCG----UGG------CCUUUA-------CUCGCG- -5'
8792 5' -56.6 NC_002484.1 + 31212 0.68 0.559593
Target:  5'- cGCgGACGCCaGCAUCGacGAUGcaacgguacgcaaguGGCGCg -3'
miRNA:   3'- -CGgCUGCGG-CGUGGCcuUUAC---------------UCGCG- -5'
8792 5' -56.6 NC_002484.1 + 52399 0.69 0.513585
Target:  5'- gGCCGAUGCCGgACagcagGGAAAggcucAGCGUc -3'
miRNA:   3'- -CGGCUGCGGCgUGg----CCUUUac---UCGCG- -5'
8792 5' -56.6 NC_002484.1 + 26821 0.69 0.510502
Target:  5'- gGCCGGauCGCUGCauGCCGGAGAaucgucugcaugucUGGGaCGUa -3'
miRNA:   3'- -CGGCU--GCGGCG--UGGCCUUU--------------ACUC-GCG- -5'
8792 5' -56.6 NC_002484.1 + 13475 0.69 0.503338
Target:  5'- aGCCGAagcaGCCGcCGCCGGGGccaacAGCGg -3'
miRNA:   3'- -CGGCUg---CGGC-GUGGCCUUuac--UCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.