Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8901 | 3' | -53.5 | NC_002484.1 | + | 50990 | 0.68 | 0.750154 |
Target: 5'- -gUACGCggcgaCGGCGUUcuGCAAU--UGGCCa -3' miRNA: 3'- ggAUGCG-----GCCGCAG--UGUUGuuACCGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 10972 | 0.67 | 0.760467 |
Target: 5'- aCCUcgGCGaucaCGGUGagCAgGGCGAUGGUCa -3' miRNA: 3'- -GGA--UGCg---GCCGCa-GUgUUGUUACCGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 18354 | 0.67 | 0.770648 |
Target: 5'- --aGCGCUGGCGaguuCAGCAGUGaCCa -3' miRNA: 3'- ggaUGCGGCCGCagu-GUUGUUACcGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 17527 | 0.67 | 0.780686 |
Target: 5'- --gACGCCGGCGUaggACGACGGagcuggaGGCg -3' miRNA: 3'- ggaUGCGGCCGCAg--UGUUGUUa------CCGg -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 35550 | 0.66 | 0.809831 |
Target: 5'- --aGCGCCaGGgGUCACAAgcuUGaGCCg -3' miRNA: 3'- ggaUGCGG-CCgCAGUGUUguuAC-CGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 18261 | 0.66 | 0.822874 |
Target: 5'- cUCUGCGCCaGGCcagggccgggaacaUCGcCGGCAagGGCCa -3' miRNA: 3'- -GGAUGCGG-CCGc-------------AGU-GUUGUuaCCGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 51839 | 0.66 | 0.828345 |
Target: 5'- uCC-GCGCCGGCuUgGCGuGCuuguccuuGAUGGCCa -3' miRNA: 3'- -GGaUGCGGCCGcAgUGU-UG--------UUACCGG- -5' |
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8901 | 3' | -53.5 | NC_002484.1 | + | 27373 | 0.66 | 0.828345 |
Target: 5'- aCCUGCGCCacaccugCGCGGC-AUGGCUg -3' miRNA: 3'- -GGAUGCGGccgca--GUGUUGuUACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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