Results 1 - 20 of 213 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8942 | 3' | -54.7 | NC_002512.2 | + | 29557 | 0.66 | 0.978569 |
Target: 5'- cGACAGG-AGGAcgccGGCGGGaagccgcuccccGAGGGCGg -3' miRNA: 3'- -CUGUUCuUUCUcu--CCGCCC------------CUCCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 103928 | 0.66 | 0.978569 |
Target: 5'- -cCGAGGGugugucgucGAGGGGCGGaagaggaaaGGAGGACa -3' miRNA: 3'- cuGUUCUUu--------CUCUCCGCC---------CCUCCUGc -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 222300 | 0.66 | 0.978569 |
Target: 5'- gGACAgcuAGGAGGAGAcucagGGCGaGacaGAGGACGa -3' miRNA: 3'- -CUGU---UCUUUCUCU-----CCGC-Cc--CUCCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 169412 | 0.66 | 0.978569 |
Target: 5'- -cCAAGuguGGGAGGGGCcugguauaugguGGGGGccGGACGu -3' miRNA: 3'- cuGUUCu--UUCUCUCCG------------CCCCU--CCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 49554 | 0.66 | 0.978569 |
Target: 5'- aGACGAGGGAGA-AGGCGcagcGGGAccuGACGa -3' miRNA: 3'- -CUGUUCUUUCUcUCCGC----CCCUc--CUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 169310 | 0.66 | 0.978569 |
Target: 5'- -cCAAGuguGGGAGGGGCcugguauauaguGGGGGccGGACGu -3' miRNA: 3'- cuGUUCu--UUCUCUCCG------------CCCCU--CCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 96379 | 0.66 | 0.977187 |
Target: 5'- --gGGGGAGGAGAGGaaacCGGGGAcucaccggcggccucGGACc -3' miRNA: 3'- cugUUCUUUCUCUCC----GCCCCU---------------CCUGc -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 57940 | 0.66 | 0.976231 |
Target: 5'- aGCGGGAGAuAGAcgggcgcggcgcGGCGGGcgaaGAGGGCGa -3' miRNA: 3'- cUGUUCUUUcUCU------------CCGCCC----CUCCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 77005 | 0.66 | 0.976231 |
Target: 5'- --aAGGAGGGAGGgugaacggacGGCgaGGGGAaGGACGa -3' miRNA: 3'- cugUUCUUUCUCU----------CCG--CCCCU-CCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 4525 | 0.66 | 0.976231 |
Target: 5'- gGugGAGGAGGAGAagcGGCGacGGuGAGG-CGg -3' miRNA: 3'- -CugUUCUUUCUCU---CCGC--CC-CUCCuGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 25556 | 0.66 | 0.976231 |
Target: 5'- cACAGGuacauGAGGCGGuuGAGGGCGa -3' miRNA: 3'- cUGUUCuuucuCUCCGCCc-CUCCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 87257 | 0.66 | 0.975987 |
Target: 5'- uGCGAGGGgucuccGGGGAGcgaacacgcggucGUGGGGuGGACGg -3' miRNA: 3'- cUGUUCUU------UCUCUC-------------CGCCCCuCCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 113266 | 0.66 | 0.975987 |
Target: 5'- aGGCGuucacGAAGGGGggccacAGGCGGGGgucgugcAGGGCGc -3' miRNA: 3'- -CUGUu----CUUUCUC------UCCGCCCC-------UCCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 190637 | 0.66 | 0.975987 |
Target: 5'- gGACAGGAGGaguucGAGAGGUGGacGGuacagucGGGACa -3' miRNA: 3'- -CUGUUCUUU-----CUCUCCGCC--CC-------UCCUGc -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 228536 | 0.66 | 0.97371 |
Target: 5'- cGACGAGAcgacacGGGAGGCGGacGGcagccGGACGc -3' miRNA: 3'- -CUGUUCUuu----CUCUCCGCC--CCu----CCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 173647 | 0.66 | 0.97371 |
Target: 5'- -cCGGGucGGGGGcGGCGGcagcaagaaGGAGGACGa -3' miRNA: 3'- cuGUUCuuUCUCU-CCGCC---------CCUCCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 228222 | 0.66 | 0.97371 |
Target: 5'- aGGCcGGGc-GAGAcGGCGGGaAGGGCGa -3' miRNA: 3'- -CUGuUCUuuCUCU-CCGCCCcUCCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 226588 | 0.66 | 0.97371 |
Target: 5'- -cCAGGAGGGcGcGGCccgGGGGAGGAgGg -3' miRNA: 3'- cuGUUCUUUCuCuCCG---CCCCUCCUgC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 81865 | 0.66 | 0.971001 |
Target: 5'- cGGCGGGAAGcgacAGAGGCccaGGGAGGcCGu -3' miRNA: 3'- -CUGUUCUUUc---UCUCCGc--CCCUCCuGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 2068 | 0.66 | 0.971001 |
Target: 5'- aGCGGGAGcgcGGAGuccacgccGGGCGGGaGcGGGCGg -3' miRNA: 3'- cUGUUCUU---UCUC--------UCCGCCC-CuCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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