miRNA display CGI


Results 21 - 40 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 3' -54.7 NC_002512.2 + 200251 0.68 0.936781
Target:  5'- cGACGGGGAcGAcGAGGacgacgaCGGGGAcgaGGACGa -3'
miRNA:   3'- -CUGUUCUUuCU-CUCC-------GCCCCU---CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 93748 0.68 0.946293
Target:  5'- gGACGGGGAcggagggcucggAGGGAGG-GaGGGAGGuCGg -3'
miRNA:   3'- -CUGUUCUU------------UCUCUCCgC-CCCUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 144268 0.67 0.961684
Target:  5'- aGCGGGcGAAGucccAGAGGCGGcGGAGGcACc -3'
miRNA:   3'- cUGUUC-UUUC----UCUCCGCC-CCUCC-UGc -5'
8942 3' -54.7 NC_002512.2 + 228536 0.66 0.97371
Target:  5'- cGACGAGAcgacacGGGAGGCGGacGGcagccGGACGc -3'
miRNA:   3'- -CUGUUCUuu----CUCUCCGCC--CCu----CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 95 0.68 0.921983
Target:  5'- -uCAAGAAAGGGcGGGUGGGcgGAGGcgGCGg -3'
miRNA:   3'- cuGUUCUUUCUC-UCCGCCC--CUCC--UGC- -5'
8942 3' -54.7 NC_002512.2 + 229048 0.68 0.932396
Target:  5'- aGGCAGGAgGAGGGAGGagaGaGGaGAGGAgGa -3'
miRNA:   3'- -CUGUUCU-UUCUCUCCg--C-CC-CUCCUgC- -5'
8942 3' -54.7 NC_002512.2 + 96402 0.67 0.950471
Target:  5'- aGCAGGGccGAGuGGUucucGGGGAGGAa- -3'
miRNA:   3'- cUGUUCUuuCUCuCCG----CCCCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 173647 0.66 0.97371
Target:  5'- -cCGGGucGGGGGcGGCGGcagcaagaaGGAGGACGa -3'
miRNA:   3'- cuGUUCuuUCUCU-CCGCC---------CCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 196274 0.68 0.932396
Target:  5'- cGGCGAGggGGGaaggaaucgcuGAuGCGGGuGAGGACc -3'
miRNA:   3'- -CUGUUCuuUCU-----------CUcCGCCC-CUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 190637 0.66 0.975987
Target:  5'- gGACAGGAGGaguucGAGAGGUGGacGGuacagucGGGACa -3'
miRNA:   3'- -CUGUUCUUU-----CUCUCCGCC--CC-------UCCUGc -5'
8942 3' -54.7 NC_002512.2 + 109038 0.68 0.946293
Target:  5'- --nGAGGAccGGGGGGGCucGGGGGACGa -3'
miRNA:   3'- cugUUCUU--UCUCUCCGccCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 229294 0.68 0.936781
Target:  5'- aGACAgauguucGGAGAG-GAGGCaGGaGGAGGAa- -3'
miRNA:   3'- -CUGU-------UCUUUCuCUCCG-CC-CCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 103681 0.67 0.954427
Target:  5'- cGACGucgcAGAGGGcggcGGAcgcGGCGGGaGGGGGCGc -3'
miRNA:   3'- -CUGU----UCUUUC----UCU---CCGCCC-CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 114982 0.67 0.961684
Target:  5'- cGACGcGAuGGAGAGGgGGcuGGuGGACa -3'
miRNA:   3'- -CUGUuCUuUCUCUCCgCC--CCuCCUGc -5'
8942 3' -54.7 NC_002512.2 + 160706 0.66 0.968098
Target:  5'- gGGgGGGAcuuGGGGGGGGacauCGGGGGGGAUu -3'
miRNA:   3'- -CUgUUCU---UUCUCUCC----GCCCCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 228222 0.66 0.97371
Target:  5'- aGGCcGGGc-GAGAcGGCGGGaAGGGCGa -3'
miRNA:   3'- -CUGuUCUuuCUCU-CCGCCCcUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 229415 0.69 0.91472
Target:  5'- cGCAcccGGGAGGAGAGG-GGGGAaaaaagcgcaagcgGGAUGa -3'
miRNA:   3'- cUGU---UCUUUCUCUCCgCCCCU--------------CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 113248 0.68 0.921983
Target:  5'- aGCAGGAgccucggcagcGAGGGGGGCGGccGGcGGGGCa -3'
miRNA:   3'- cUGUUCU-----------UUCUCUCCGCC--CC-UCCUGc -5'
8942 3' -54.7 NC_002512.2 + 229499 0.68 0.921983
Target:  5'- -uCAAGAAAGGGcGGGUGGGcgGAGGcgGCGg -3'
miRNA:   3'- cuGUUCUUUCUC-UCCGCCC--CUCC--UGC- -5'
8942 3' -54.7 NC_002512.2 + 119543 0.68 0.927305
Target:  5'- gGGCuAGgcGGGGA-GCGGGGAccGGGCGg -3'
miRNA:   3'- -CUGuUCuuUCUCUcCGCCCCU--CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.