Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8946 | 3' | -56.7 | NC_002512.2 | + | 227517 | 0.7 | 0.795277 |
Target: 5'- -cGGGGGggaGaGUCCGGCGGCGGaCGGg -3' miRNA: 3'- caCCUCCag-CaCAGGCUGCUGUC-GCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 218938 | 0.7 | 0.795277 |
Target: 5'- --cGAGGcCGUGUCUGACGACGaUGAa -3' miRNA: 3'- cacCUCCaGCACAGGCUGCUGUcGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 30293 | 0.7 | 0.803887 |
Target: 5'- -aGGAGGccccCGcGUCCGACGACccGCGGu -3' miRNA: 3'- caCCUCCa---GCaCAGGCUGCUGu-CGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 221415 | 0.7 | 0.812353 |
Target: 5'- -cGGcGGGUC-UGUCCGACGGCcgccauGCGGa -3' miRNA: 3'- caCC-UCCAGcACAGGCUGCUGu-----CGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 167499 | 0.69 | 0.852279 |
Target: 5'- --cGAGGcCGUGUCCGAgGGCGccauGCGGc -3' miRNA: 3'- cacCUCCaGCACAGGCUgCUGU----CGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 201863 | 0.69 | 0.828825 |
Target: 5'- cUGGGGccugCG-GUCCGAgGACGGCGGc -3' miRNA: 3'- cACCUCca--GCaCAGGCUgCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 193233 | 0.69 | 0.852279 |
Target: 5'- cUGGGGGUCaacUG-CCGACGGCGGUu- -3' miRNA: 3'- cACCUCCAGc--ACaGGCUGCUGUCGcu -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 191525 | 0.69 | 0.836817 |
Target: 5'- -aGGAGGcCGUgggGUCgGGCGACccGGCGGa -3' miRNA: 3'- caCCUCCaGCA---CAGgCUGCUG--UCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 152802 | 0.69 | 0.828825 |
Target: 5'- -cGGAGGUCcg---CGGCGACGGCGGg -3' miRNA: 3'- caCCUCCAGcacagGCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 114008 | 0.69 | 0.836817 |
Target: 5'- -cGGuuGUCGUcGUCCGGCGGgcccgccuCGGCGAa -3' miRNA: 3'- caCCucCAGCA-CAGGCUGCU--------GUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 17884 | 0.69 | 0.852279 |
Target: 5'- -cGGGGGaCGUGauaGGCGGCGGCGGc -3' miRNA: 3'- caCCUCCaGCACaggCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 118076 | 0.69 | 0.844637 |
Target: 5'- -cGGAGGgggCGgcUCCGGCGccgGCGGCGAc -3' miRNA: 3'- caCCUCCa--GCacAGGCUGC---UGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 89741 | 0.69 | 0.859737 |
Target: 5'- -cGGAGGUCGUGggagagguUCCcGCGGuCGGCGc -3' miRNA: 3'- caCCUCCAGCAC--------AGGcUGCU-GUCGCu -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 139811 | 0.68 | 0.887621 |
Target: 5'- -gGGGccucGGUCGggUGUCCaagGACGugGGCGAg -3' miRNA: 3'- caCCU----CCAGC--ACAGG---CUGCugUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 195001 | 0.68 | 0.900332 |
Target: 5'- --aGAGGgcgaCGgcgGUcCCGGCGGCGGCGAc -3' miRNA: 3'- cacCUCCa---GCa--CA-GGCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 16502 | 0.68 | 0.867005 |
Target: 5'- -cGGGGGcCG-GaCCGACGAUAGCa- -3' miRNA: 3'- caCCUCCaGCaCaGGCUGCUGUCGcu -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 118806 | 0.68 | 0.887621 |
Target: 5'- uGUGGGcccccGUCGUGgUCGGCGACcGCGAg -3' miRNA: 3'- -CACCUc----CAGCACaGGCUGCUGuCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 227616 | 0.68 | 0.867005 |
Target: 5'- -cGGAGGgCG-Gg-CGGCGGCGGCGAg -3' miRNA: 3'- caCCUCCaGCaCagGCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 32081 | 0.68 | 0.900332 |
Target: 5'- -gGGGGGUCG---CCGAUGGCGGCc- -3' miRNA: 3'- caCCUCCAGCacaGGCUGCUGUCGcu -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 84628 | 0.68 | 0.900332 |
Target: 5'- -aGcAGGUCGUcGUCCaGGCGGCGGCc- -3' miRNA: 3'- caCcUCCAGCA-CAGG-CUGCUGUCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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