Results 41 - 60 of 354 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8946 | 5' | -62.1 | NC_002512.2 | + | 131870 | 0.66 | 0.763866 |
Target: 5'- gGGCCGGAgaCGgggaGCCggagggggagaGGGGGgGUCGGUc -3' miRNA: 3'- -CUGGCCU--GCag--CGG-----------CCCCUgCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 82205 | 0.66 | 0.805971 |
Target: 5'- gGGCCGG-CGUCcucCCGGGG-CGggaagCGGg -3' miRNA: 3'- -CUGGCCuGCAGc--GGCCCCuGCa----GCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 229576 | 0.66 | 0.805971 |
Target: 5'- cGGCa-GAgGagGCCGGaGGGCGUgGGCu -3' miRNA: 3'- -CUGgcCUgCagCGGCC-CCUGCAgCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 224934 | 0.66 | 0.814021 |
Target: 5'- gGACCGGGucCGU-GCCGGuGuCGcUCGGCu -3' miRNA: 3'- -CUGGCCU--GCAgCGGCCcCuGC-AGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 72864 | 0.66 | 0.780203 |
Target: 5'- -uCCGGgccGCGUCGCCGuugucgcGGGGC-UCGGg -3' miRNA: 3'- cuGGCC---UGCAGCGGC-------CCCUGcAGCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 13400 | 0.66 | 0.814021 |
Target: 5'- uACCuGACG-CGCUGcgccucccuguGGGACGcCGGCu -3' miRNA: 3'- cUGGcCUGCaGCGGC-----------CCCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 137176 | 0.66 | 0.797788 |
Target: 5'- -cCCGGACGUcCGUaCGGcGuCGUCGGUc -3' miRNA: 3'- cuGGCCUGCA-GCG-GCCcCuGCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 116705 | 0.66 | 0.772512 |
Target: 5'- gGAgCGGACGgcgaCGCCGGucGCGUcccgcccggccgCGGCg -3' miRNA: 3'- -CUgGCCUGCa---GCGGCCccUGCA------------GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 43055 | 0.66 | 0.805159 |
Target: 5'- cGACgcgcaGGGCcUCGCCGaggcaccggucccGGGGCG-CGGCg -3' miRNA: 3'- -CUGg----CCUGcAGCGGC-------------CCCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 130125 | 0.66 | 0.797788 |
Target: 5'- aGCUGGAgG-C-CCGGGGugGUgucgCGGCc -3' miRNA: 3'- cUGGCCUgCaGcGGCCCCugCA----GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 31801 | 0.66 | 0.797788 |
Target: 5'- cGACgGGGaGaCGCCGGGG-CG-CGGUc -3' miRNA: 3'- -CUGgCCUgCaGCGGCCCCuGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 29910 | 0.66 | 0.797788 |
Target: 5'- cGCCGGGCG-CGC---GGACG-CGGCg -3' miRNA: 3'- cUGGCCUGCaGCGgccCCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 43538 | 0.66 | 0.797788 |
Target: 5'- cGGCCccgaaGACGUUGUCGcGGAUGaCGGCg -3' miRNA: 3'- -CUGGc----CUGCAGCGGCcCCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 8141 | 0.66 | 0.775941 |
Target: 5'- uGCCGuucGACGgcgcguccgccaggCGCuCGGGGAUcUCGGCg -3' miRNA: 3'- cUGGC---CUGCa-------------GCG-GCCCCUGcAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 97863 | 0.66 | 0.781052 |
Target: 5'- uGGCCGacGACGUCGCCGccGAgGUcccccCGGCg -3' miRNA: 3'- -CUGGC--CUGCAGCGGCccCUgCA-----GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 27959 | 0.66 | 0.78948 |
Target: 5'- -cCCGGGCccGUCGCCGauGGGCGgccgGGCg -3' miRNA: 3'- cuGGCCUG--CAGCGGCc-CCUGCag--CCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 133213 | 0.66 | 0.792818 |
Target: 5'- -uCgGGACGUCGUCcgcccagcgaggacgGGaGGGCGgCGGCg -3' miRNA: 3'- cuGgCCUGCAGCGG---------------CC-CCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 142069 | 0.66 | 0.7819 |
Target: 5'- cGGCCGGGgGaUCGCuCGGGGgugcaaccgaacgcGgacccgguaccgaccCGUCGGCg -3' miRNA: 3'- -CUGGCCUgC-AGCG-GCCCC--------------U---------------GCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 90909 | 0.66 | 0.772512 |
Target: 5'- cGGCCGGACuGgcggcCGCgaaCGGGGcCGgcgCGGCc -3' miRNA: 3'- -CUGGCCUG-Ca----GCG---GCCCCuGCa--GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 54673 | 0.66 | 0.805971 |
Target: 5'- gGACCGG-CGga--CGGuGGACG-CGGCg -3' miRNA: 3'- -CUGGCCuGCagcgGCC-CCUGCaGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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