miRNA display CGI


Results 41 - 60 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 167721 0.73 0.403218
Target:  5'- uACCGGucucuCGUCGagCGGGGcgaggagcugccggGCGUCGGCg -3'
miRNA:   3'- cUGGCCu----GCAGCg-GCCCC--------------UGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 20777 0.73 0.413518
Target:  5'- -cCCGGACGUCGggacaCGGGGugacgacccggACGUCGGg -3'
miRNA:   3'- cuGGCCUGCAGCg----GCCCC-----------UGCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 67971 0.73 0.413518
Target:  5'- cGCCGuGGCGUcCGCCGGaGGAgGgcCGGCg -3'
miRNA:   3'- cUGGC-CUGCA-GCGGCC-CCUgCa-GCCG- -5'
8946 5' -62.1 NC_002512.2 + 100290 0.73 0.42155
Target:  5'- aGCgGGGCGaguUCGUCGGGGGCGaCGGg -3'
miRNA:   3'- cUGgCCUGC---AGCGGCCCCUGCaGCCg -5'
8946 5' -62.1 NC_002512.2 + 80640 0.73 0.42155
Target:  5'- cGGCCGuccgcGGCGgcggCGCCGGGucCGUCGGUc -3'
miRNA:   3'- -CUGGC-----CUGCa---GCGGCCCcuGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 198159 0.73 0.39774
Target:  5'- gGGCCGGGuCGgCGCCGGccGGcggaccuccACGUCGGCg -3'
miRNA:   3'- -CUGGCCU-GCaGCGGCC--CC---------UGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 103313 0.73 0.400865
Target:  5'- aGAuCCGGGCGuUCGCCaggacgaccgagcguGGGGGCGUCGa- -3'
miRNA:   3'- -CU-GGCCUGC-AGCGG---------------CCCCUGCAGCcg -5'
8946 5' -62.1 NC_002512.2 + 106016 0.73 0.39774
Target:  5'- --aCGGGCGgcgcCGCCGGGGGUG-CGGCg -3'
miRNA:   3'- cugGCCUGCa---GCGGCCCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 228035 0.73 0.389998
Target:  5'- cGACCGGACGgcggcgagaCGCCcGcGGACGgcugCGGCg -3'
miRNA:   3'- -CUGGCCUGCa--------GCGGcC-CCUGCa---GCCG- -5'
8946 5' -62.1 NC_002512.2 + 158917 0.73 0.382355
Target:  5'- cGGCCGaGuACGgcuUCGgCGGGGGCGcCGGCg -3'
miRNA:   3'- -CUGGC-C-UGC---AGCgGCCCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 122030 0.72 0.470769
Target:  5'- gGAUCGG-CGcUCGCgcacgccCGGGGcgGCGUCGGCg -3'
miRNA:   3'- -CUGGCCuGC-AGCG-------GCCCC--UGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 76680 0.72 0.441203
Target:  5'- cGACCGGAgauccgcucgucugaUGUCGUCGGcGGCGUCaGCg -3'
miRNA:   3'- -CUGGCCU---------------GCAGCGGCCcCUGCAGcCG- -5'
8946 5' -62.1 NC_002512.2 + 122095 0.72 0.471629
Target:  5'- cGCCGGACGcgagGUCGGcgcuGACGUCGGCc -3'
miRNA:   3'- cUGGCCUGCag--CGGCCc---CUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 229550 0.72 0.454591
Target:  5'- aGCCGGGCGgggCGCCGGcGGAgGagCGcGCg -3'
miRNA:   3'- cUGGCCUGCa--GCGGCC-CCUgCa-GC-CG- -5'
8946 5' -62.1 NC_002512.2 + 184393 0.72 0.471629
Target:  5'- cGGCgUGGcCGcCGCCgGGGGGCGcUCGGCc -3'
miRNA:   3'- -CUG-GCCuGCaGCGG-CCCCUGC-AGCCG- -5'
8946 5' -62.1 NC_002512.2 + 224041 0.72 0.446198
Target:  5'- cGACgGGGC--CGCCGGGGAcgacuCGUCGGg -3'
miRNA:   3'- -CUGgCCUGcaGCGGCCCCU-----GCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 123137 0.72 0.446198
Target:  5'- aGCCGGACGcggagcgcCGCCGGGGcCGaggaGGCg -3'
miRNA:   3'- cUGGCCUGCa-------GCGGCCCCuGCag--CCG- -5'
8946 5' -62.1 NC_002512.2 + 120770 0.72 0.437892
Target:  5'- uGCUGGAcucggcggcCGUCGgCGGGGGCGgcgggaCGGCg -3'
miRNA:   3'- cUGGCCU---------GCAGCgGCCCCUGCa-----GCCG- -5'
8946 5' -62.1 NC_002512.2 + 147 0.72 0.454591
Target:  5'- aGCCGGGCGgggCGCCGGcGGAgGagCGcGCg -3'
miRNA:   3'- cUGGCCUGCa--GCGGCC-CCUgCa-GC-CG- -5'
8946 5' -62.1 NC_002512.2 + 7030 0.72 0.429675
Target:  5'- uGCCGGGC-UCGUCGuucGGGACGaagCGGCa -3'
miRNA:   3'- cUGGCCUGcAGCGGC---CCCUGCa--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.