miRNA display CGI


Results 61 - 80 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 102865 0.68 0.791889
Target:  5'- -cCCGACC--GGGG-GGACgccuacggGGGACCCg -3'
miRNA:   3'- cuGGCUGGagCCUCaCCUG--------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 102900 0.67 0.816739
Target:  5'- cGACCcGCgCUgGGAGaGGAcCGcGGACCCc -3'
miRNA:   3'- -CUGGcUG-GAgCCUCaCCU-GC-CCUGGG- -5'
8947 3' -60 NC_002512.2 + 103167 0.66 0.862331
Target:  5'- cGCCGcGCC-CGGcGaGGACGaGGACCUg -3'
miRNA:   3'- cUGGC-UGGaGCCuCaCCUGC-CCUGGG- -5'
8947 3' -60 NC_002512.2 + 103302 0.68 0.774684
Target:  5'- aGCCGGCCgucguaGGAcaGGACGGccgaGGCCCg -3'
miRNA:   3'- cUGGCUGGag----CCUcaCCUGCC----CUGGG- -5'
8947 3' -60 NC_002512.2 + 106534 0.66 0.8478
Target:  5'- --gCGGCCcCGGAccuUGGACGGGggcuccagcgGCCCg -3'
miRNA:   3'- cugGCUGGaGCCUc--ACCUGCCC----------UGGG- -5'
8947 3' -60 NC_002512.2 + 107494 0.67 0.800308
Target:  5'- cGACCGGCCcgcagCGGucucUGcGGCuGGACCCg -3'
miRNA:   3'- -CUGGCUGGa----GCCuc--AC-CUGcCCUGGG- -5'
8947 3' -60 NC_002512.2 + 108828 0.67 0.800308
Target:  5'- -uCCGcGCCUCGGGc--GGCGGGuACCCg -3'
miRNA:   3'- cuGGC-UGGAGCCUcacCUGCCC-UGGG- -5'
8947 3' -60 NC_002512.2 + 109041 0.68 0.774684
Target:  5'- gGACCGGgggggCUCGGGGgacGACcGGACCCg -3'
miRNA:   3'- -CUGGCUg----GAGCCUCac-CUGcCCUGGG- -5'
8947 3' -60 NC_002512.2 + 109854 0.7 0.645153
Target:  5'- gGACCGGCgUgGcGGcGGugGGGACCUa -3'
miRNA:   3'- -CUGGCUGgAgCcUCaCCugCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 111988 0.67 0.840276
Target:  5'- cGCUGGCCgUGGAGcagcGACGGGcCCCc -3'
miRNA:   3'- cUGGCUGGaGCCUCac--CUGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 112897 0.66 0.855153
Target:  5'- cGugCGGCCgUCGGcccgcccGGACGGGgcgucggcgGCCCg -3'
miRNA:   3'- -CugGCUGG-AGCCuca----CCUGCCC---------UGGG- -5'
8947 3' -60 NC_002512.2 + 113154 0.73 0.513396
Target:  5'- cGCCGGCCUCGccgcGGccGGGCGGGACgCg -3'
miRNA:   3'- cUGGCUGGAGCc---UCa-CCUGCCCUGgG- -5'
8947 3' -60 NC_002512.2 + 116379 0.67 0.824739
Target:  5'- uGCUGGCCcugCGGuccccgGGGCGGGucGCCCu -3'
miRNA:   3'- cUGGCUGGa--GCCuca---CCUGCCC--UGGG- -5'
8947 3' -60 NC_002512.2 + 116454 0.67 0.832587
Target:  5'- cACCcAgCUCGGGGacgGGGCGGuGAUCCc -3'
miRNA:   3'- cUGGcUgGAGCCUCa--CCUGCC-CUGGG- -5'
8947 3' -60 NC_002512.2 + 116689 0.67 0.808593
Target:  5'- -cCCGGCUcccgcucgCGGAGcGGACGGcGACgCCg -3'
miRNA:   3'- cuGGCUGGa-------GCCUCaCCUGCC-CUG-GG- -5'
8947 3' -60 NC_002512.2 + 116888 0.68 0.765911
Target:  5'- cGGCUGGCggCGGGGccgGGGCGGGcUCCu -3'
miRNA:   3'- -CUGGCUGgaGCCUCa--CCUGCCCuGGG- -5'
8947 3' -60 NC_002512.2 + 117097 0.66 0.869328
Target:  5'- gGGCCGcCCUggaccCGGcacAGcGGcACGGGGCCCc -3'
miRNA:   3'- -CUGGCuGGA-----GCC---UCaCC-UGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 118112 0.71 0.616503
Target:  5'- gGACCGGCCguaucgcugaCGGGGgaggGGGCGGGGgCg -3'
miRNA:   3'- -CUGGCUGGa---------GCCUCa---CCUGCCCUgGg -5'
8947 3' -60 NC_002512.2 + 118199 0.68 0.748062
Target:  5'- cGACCccgaGGCCgucuGGUGcGACGGGGCCCu -3'
miRNA:   3'- -CUGG----CUGGagccUCAC-CUGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 118300 0.7 0.683192
Target:  5'- gGACaaCGACCUgcaguacaucCGG-GUGGACGGGACg- -3'
miRNA:   3'- -CUG--GCUGGA----------GCCuCACCUGCCCUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.