Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8947 | 5' | -56.2 | NC_002512.2 | + | 103500 | 0.66 | 0.963552 |
Target: 5'- cGGGGccccgggcgcucUCCCGGGCGGCcaGAGGaccgUGAa -3' miRNA: 3'- uCUCC------------AGGGCUUGCCGaaCUCCa---GCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 103012 | 0.66 | 0.963552 |
Target: 5'- uGGAGaagccccaGUCCCGGACGGgaaGAGGaCGAc -3' miRNA: 3'- -UCUC--------CAGGGCUUGCCgaaCUCCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 195010 | 0.66 | 0.963552 |
Target: 5'- cGGcGGUCCCGGcgGCGGCgacGAcGG-CGAc -3' miRNA: 3'- -UCuCCAGGGCU--UGCCGaa-CU-CCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 133862 | 0.66 | 0.963552 |
Target: 5'- cGAGGacgUCCUgGGGCGGCUcGAGGagCGGc -3' miRNA: 3'- uCUCC---AGGG-CUUGCCGAaCUCCa-GCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 65446 | 0.66 | 0.963552 |
Target: 5'- cGAGGgCgCCGAGCGGCUUcccGG-CGAc -3' miRNA: 3'- uCUCCaG-GGCUUGCCGAAcu-CCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 104793 | 0.66 | 0.961567 |
Target: 5'- cGGGGUCCgCGcGCGGCggguuguacuccaGGGcGUCGAa -3' miRNA: 3'- uCUCCAGG-GCuUGCCGaa-----------CUC-CAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 40309 | 0.66 | 0.960203 |
Target: 5'- cGAGGaCCCG-GCGGCcc--GGUCGGa -3' miRNA: 3'- uCUCCaGGGCuUGCCGaacuCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 103600 | 0.66 | 0.958095 |
Target: 5'- cGAGGgcggugucgacggccUCCCGGuACcGCUgGAGGUCGGc -3' miRNA: 3'- uCUCC---------------AGGGCU-UGcCGAaCUCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 81243 | 0.66 | 0.952883 |
Target: 5'- cGGaAGGagUCCG-GCGGCcugcggUUGAGGUCGAc -3' miRNA: 3'- -UC-UCCa-GGGCuUGCCG------AACUCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 45189 | 0.66 | 0.952883 |
Target: 5'- cGGAGGUCUCGAccgggaccgGCGGCgcgGAcGGcCGc -3' miRNA: 3'- -UCUCCAGGGCU---------UGCCGaa-CU-CCaGCu -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 195207 | 0.66 | 0.952883 |
Target: 5'- -uGGGUgCCGGugucugagggACGGCcgGAGGUUGAc -3' miRNA: 3'- ucUCCAgGGCU----------UGCCGaaCUCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 47812 | 0.66 | 0.948904 |
Target: 5'- cAGAc--CCCGGagccGCGGC-UGAGGUCGGc -3' miRNA: 3'- -UCUccaGGGCU----UGCCGaACUCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 82418 | 0.66 | 0.948904 |
Target: 5'- cGGuGGUCCC--GCGGCggaGGGGaCGAg -3' miRNA: 3'- -UCuCCAGGGcuUGCCGaa-CUCCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 212401 | 0.66 | 0.948904 |
Target: 5'- aGGAGGcggCCGAcgaggacgACgGGCggGAGGUCGAg -3' miRNA: 3'- -UCUCCag-GGCU--------UG-CCGaaCUCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 45102 | 0.66 | 0.944707 |
Target: 5'- cGGAGG-CCCGGGCcacgucCUcGGGGUCGAc -3' miRNA: 3'- -UCUCCaGGGCUUGcc----GAaCUCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 223752 | 0.66 | 0.944707 |
Target: 5'- uGGAGGUCguguCCGAcgACaGC--GAGGUCGAg -3' miRNA: 3'- -UCUCCAG----GGCU--UGcCGaaCUCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 188923 | 0.67 | 0.940291 |
Target: 5'- cGGAGaGUCCCGGuggcGgGGCgcgGcGGUCGGu -3' miRNA: 3'- -UCUC-CAGGGCU----UgCCGaa-CuCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 84169 | 0.67 | 0.940291 |
Target: 5'- gGGAGGUCCCGGuccagguuCGGCggGAccaGG-CGGc -3' miRNA: 3'- -UCUCCAGGGCUu-------GCCGaaCU---CCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 57613 | 0.67 | 0.940291 |
Target: 5'- cAGAuGUCCCGGGCgaccgagcgGGCgUGAGG-CGAg -3' miRNA: 3'- -UCUcCAGGGCUUG---------CCGaACUCCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 14353 | 0.67 | 0.940291 |
Target: 5'- cAGcAGGaucUCCCGGAgGGCgggaucGAGGUUGGg -3' miRNA: 3'- -UC-UCC---AGGGCUUgCCGaa----CUCCAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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