miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 5' -56.2 NC_002512.2 + 65446 0.66 0.963552
Target:  5'- cGAGGgCgCCGAGCGGCUUcccGG-CGAc -3'
miRNA:   3'- uCUCCaG-GGCUUGCCGAAcu-CCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 195010 0.66 0.963552
Target:  5'- cGGcGGUCCCGGcgGCGGCgacGAcGG-CGAc -3'
miRNA:   3'- -UCuCCAGGGCU--UGCCGaa-CU-CCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 133862 0.66 0.963552
Target:  5'- cGAGGacgUCCUgGGGCGGCUcGAGGagCGGc -3'
miRNA:   3'- uCUCC---AGGG-CUUGCCGAaCUCCa-GCU- -5'
8947 5' -56.2 NC_002512.2 + 103500 0.66 0.963552
Target:  5'- cGGGGccccgggcgcucUCCCGGGCGGCcaGAGGaccgUGAa -3'
miRNA:   3'- uCUCC------------AGGGCUUGCCGaaCUCCa---GCU- -5'
8947 5' -56.2 NC_002512.2 + 103012 0.66 0.963552
Target:  5'- uGGAGaagccccaGUCCCGGACGGgaaGAGGaCGAc -3'
miRNA:   3'- -UCUC--------CAGGGCUUGCCgaaCUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 104793 0.66 0.961567
Target:  5'- cGGGGUCCgCGcGCGGCggguuguacuccaGGGcGUCGAa -3'
miRNA:   3'- uCUCCAGG-GCuUGCCGaa-----------CUC-CAGCU- -5'
8947 5' -56.2 NC_002512.2 + 40309 0.66 0.960203
Target:  5'- cGAGGaCCCG-GCGGCcc--GGUCGGa -3'
miRNA:   3'- uCUCCaGGGCuUGCCGaacuCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 103600 0.66 0.958095
Target:  5'- cGAGGgcggugucgacggccUCCCGGuACcGCUgGAGGUCGGc -3'
miRNA:   3'- uCUCC---------------AGGGCU-UGcCGAaCUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 195207 0.66 0.952883
Target:  5'- -uGGGUgCCGGugucugagggACGGCcgGAGGUUGAc -3'
miRNA:   3'- ucUCCAgGGCU----------UGCCGaaCUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 81243 0.66 0.952883
Target:  5'- cGGaAGGagUCCG-GCGGCcugcggUUGAGGUCGAc -3'
miRNA:   3'- -UC-UCCa-GGGCuUGCCG------AACUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 45189 0.66 0.952883
Target:  5'- cGGAGGUCUCGAccgggaccgGCGGCgcgGAcGGcCGc -3'
miRNA:   3'- -UCUCCAGGGCU---------UGCCGaa-CU-CCaGCu -5'
8947 5' -56.2 NC_002512.2 + 82418 0.66 0.948904
Target:  5'- cGGuGGUCCC--GCGGCggaGGGGaCGAg -3'
miRNA:   3'- -UCuCCAGGGcuUGCCGaa-CUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 212401 0.66 0.948904
Target:  5'- aGGAGGcggCCGAcgaggacgACgGGCggGAGGUCGAg -3'
miRNA:   3'- -UCUCCag-GGCU--------UG-CCGaaCUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 47812 0.66 0.948904
Target:  5'- cAGAc--CCCGGagccGCGGC-UGAGGUCGGc -3'
miRNA:   3'- -UCUccaGGGCU----UGCCGaACUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 223752 0.66 0.944707
Target:  5'- uGGAGGUCguguCCGAcgACaGC--GAGGUCGAg -3'
miRNA:   3'- -UCUCCAG----GGCU--UGcCGaaCUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 45102 0.66 0.944707
Target:  5'- cGGAGG-CCCGGGCcacgucCUcGGGGUCGAc -3'
miRNA:   3'- -UCUCCaGGGCUUGcc----GAaCUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 84169 0.67 0.940291
Target:  5'- gGGAGGUCCCGGuccagguuCGGCggGAccaGG-CGGc -3'
miRNA:   3'- -UCUCCAGGGCUu-------GCCGaaCU---CCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 57613 0.67 0.940291
Target:  5'- cAGAuGUCCCGGGCgaccgagcgGGCgUGAGG-CGAg -3'
miRNA:   3'- -UCUcCAGGGCUUG---------CCGaACUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 14353 0.67 0.940291
Target:  5'- cAGcAGGaucUCCCGGAgGGCgggaucGAGGUUGGg -3'
miRNA:   3'- -UC-UCC---AGGGCUUgCCGaa----CUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 188923 0.67 0.940291
Target:  5'- cGGAGaGUCCCGGuggcGgGGCgcgGcGGUCGGu -3'
miRNA:   3'- -UCUC-CAGGGCU----UgCCGaa-CuCCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.