miRNA display CGI


Results 41 - 60 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 75560 0.74 0.244481
Target:  5'- -gGCUcGCCGgGGCGGGGCCGcCGcCg -3'
miRNA:   3'- ugCGGaUGGCgCCGCCCCGGCuGCuG- -5'
8949 3' -64.4 NC_002512.2 + 100134 0.74 0.244481
Target:  5'- cCGUCguggACgGCGGCGGaccGGUCGACGACa -3'
miRNA:   3'- uGCGGa---UGgCGCCGCC---CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 3069 0.74 0.244481
Target:  5'- gACGCg-GCgGCGGCGGcGGCCacGGCGGCg -3'
miRNA:   3'- -UGCGgaUGgCGCCGCC-CCGG--CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 92573 0.74 0.244481
Target:  5'- gGCGCCgacGCCGCGGCcGGGaggGGCGGCg -3'
miRNA:   3'- -UGCGGa--UGGCGCCGcCCCgg-CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 116963 0.74 0.232304
Target:  5'- cGCGCCaccggGCCGCcgacgccccguccgGGC-GGGCCGACGGCc -3'
miRNA:   3'- -UGCGGa----UGGCG--------------CCGcCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 128668 0.74 0.228701
Target:  5'- gGCGCCggaACCcgGCGGaCGGGGCCGucgugauCGGCa -3'
miRNA:   3'- -UGCGGa--UGG--CGCC-GCCCCGGCu------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 220301 0.73 0.297263
Target:  5'- cCGCCgaGCCGCcGgGGGGCCGGgGGCc -3'
miRNA:   3'- uGCGGa-UGGCGcCgCCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 165956 0.73 0.299803
Target:  5'- gACGCCggccgcuucaccaaGCUGCGGCGGGGCgGuCGGu -3'
miRNA:   3'- -UGCGGa-------------UGGCGCCGCCCCGgCuGCUg -5'
8949 3' -64.4 NC_002512.2 + 149415 0.73 0.297263
Target:  5'- -gGCCgcgaggggACCGCGGCGGGGgCgGGCG-Cg -3'
miRNA:   3'- ugCGGa-------UGGCGCCGCCCC-GgCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 102152 0.73 0.266916
Target:  5'- -gGCCgcgACCGCGGCuGGGUCGuCGAUc -3'
miRNA:   3'- ugCGGa--UGGCGCCGcCCCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 108426 0.73 0.297263
Target:  5'- uGCGCCgcCCGgGGCcgGGGGCCGGgGGg -3'
miRNA:   3'- -UGCGGauGGCgCCG--CCCCGGCUgCUg -5'
8949 3' -64.4 NC_002512.2 + 42578 0.73 0.266916
Target:  5'- gGCGCCgcgagGCgaGCGGCGGGGCgGACc-- -3'
miRNA:   3'- -UGCGGa----UGg-CGCCGCCCCGgCUGcug -5'
8949 3' -64.4 NC_002512.2 + 226687 0.73 0.284813
Target:  5'- aGCGCCgggccgucgcCCGCGGCGGcGUCGAgCGACg -3'
miRNA:   3'- -UGCGGau--------GGCGCCGCCcCGGCU-GCUG- -5'
8949 3' -64.4 NC_002512.2 + 229540 0.73 0.278744
Target:  5'- aACGCCggggaGCCG-GGCGGGgcGCCGGCGGa -3'
miRNA:   3'- -UGCGGa----UGGCgCCGCCC--CGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 137 0.73 0.278744
Target:  5'- aACGCCggggaGCCG-GGCGGGgcGCCGGCGGa -3'
miRNA:   3'- -UGCGGa----UGGCgCCGCCC--CGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 227505 0.73 0.278744
Target:  5'- gACGCCgcgACC-CGGgGGGGagaguCCGGCGGCg -3'
miRNA:   3'- -UGCGGa--UGGcGCCgCCCC-----GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 228052 0.73 0.272778
Target:  5'- gACGCCcgcggacgGCUGCGGCGcGGGa-GACGACg -3'
miRNA:   3'- -UGCGGa-------UGGCGCCGC-CCCggCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 181580 0.73 0.284201
Target:  5'- cCGUCUGCgGCGGCaGGGGCgGcggguccGCGACg -3'
miRNA:   3'- uGCGGAUGgCGCCG-CCCCGgC-------UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 38930 0.73 0.266916
Target:  5'- -gGCC-GCCGCGGCGGGcGCCcGCGuGCg -3'
miRNA:   3'- ugCGGaUGGCGCCGCCC-CGGcUGC-UG- -5'
8949 3' -64.4 NC_002512.2 + 188647 0.73 0.297263
Target:  5'- gGCGCCgGCgGCGGCGGcGGcCCGucguccgaccGCGGCg -3'
miRNA:   3'- -UGCGGaUGgCGCCGCC-CC-GGC----------UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.