miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8951 3' -53 NC_002512.2 + 73951 0.66 0.994961
Target:  5'- uCCUCG-UCGCCGCUgcuccCGaagcUGG-AGGACg -3'
miRNA:   3'- -GGAGCaAGCGGUGGa----GC----ACCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 202101 0.66 0.994188
Target:  5'- aCCUCGUccgacCGCguCCUCGUcagcuGGUGGcGCc -3'
miRNA:   3'- -GGAGCAa----GCGguGGAGCA-----CCAUCuUG- -5'
8951 3' -53 NC_002512.2 + 41385 0.66 0.994188
Target:  5'- gCUCGUagGaCACCUCGUugcgGGU-GAACg -3'
miRNA:   3'- gGAGCAagCgGUGGAGCA----CCAuCUUG- -5'
8951 3' -53 NC_002512.2 + 8086 0.66 0.994188
Target:  5'- uCCUCGaacUCGUCGCCg---GcGUAGAGCa -3'
miRNA:   3'- -GGAGCa--AGCGGUGGagcaC-CAUCUUG- -5'
8951 3' -53 NC_002512.2 + 103227 0.66 0.994188
Target:  5'- gCUCGcgUCGCCGCC-CGUcgacggccgcGGcgAGGGCa -3'
miRNA:   3'- gGAGCa-AGCGGUGGaGCA----------CCa-UCUUG- -5'
8951 3' -53 NC_002512.2 + 198529 0.66 0.994188
Target:  5'- cCUUCGaUCuCCAgCUCGUGGUcguagccggccAGGGCg -3'
miRNA:   3'- -GGAGCaAGcGGUgGAGCACCA-----------UCUUG- -5'
8951 3' -53 NC_002512.2 + 118275 0.66 0.992355
Target:  5'- gCCUCGcUgGCCGcCCUCGUccGGaGGAAg -3'
miRNA:   3'- -GGAGCaAgCGGU-GGAGCA--CCaUCUUg -5'
8951 3' -53 NC_002512.2 + 195440 0.66 0.992355
Target:  5'- gUUCGgggUCGUCAgCUgGUGGUucgugaAGAACg -3'
miRNA:   3'- gGAGCa--AGCGGUgGAgCACCA------UCUUG- -5'
8951 3' -53 NC_002512.2 + 195821 0.66 0.992355
Target:  5'- -aUCGUcgaCGCCGCCgUCGUGGggcacgccucGAGCa -3'
miRNA:   3'- ggAGCAa--GCGGUGG-AGCACCau--------CUUG- -5'
8951 3' -53 NC_002512.2 + 202139 0.66 0.99128
Target:  5'- gUCUCGgcCGCCGCCgCG-GGgcGggUg -3'
miRNA:   3'- -GGAGCaaGCGGUGGaGCaCCauCuuG- -5'
8951 3' -53 NC_002512.2 + 156992 0.66 0.99128
Target:  5'- aCUUCGgcCGCCGCUUCG-GGcccGAGCc -3'
miRNA:   3'- -GGAGCaaGCGGUGGAGCaCCau-CUUG- -5'
8951 3' -53 NC_002512.2 + 176686 0.66 0.990089
Target:  5'- aCUgGcgCGUCGCCUUGUGGUGu--- -3'
miRNA:   3'- gGAgCaaGCGGUGGAGCACCAUcuug -5'
8951 3' -53 NC_002512.2 + 125369 0.67 0.988775
Target:  5'- uCCUUGUUCuCCACCgCGUagcGGcccUGGAACa -3'
miRNA:   3'- -GGAGCAAGcGGUGGaGCA---CC---AUCUUG- -5'
8951 3' -53 NC_002512.2 + 139118 0.67 0.987329
Target:  5'- aCCUCGUUgGCCAagaagcgcuUCUCGgccgGGUcguucgccaAGGACu -3'
miRNA:   3'- -GGAGCAAgCGGU---------GGAGCa---CCA---------UCUUG- -5'
8951 3' -53 NC_002512.2 + 29684 0.67 0.987177
Target:  5'- uCCUCGggcUCGUCGCgCUCGUccgucucGGaGGAGCc -3'
miRNA:   3'- -GGAGCa--AGCGGUG-GAGCA-------CCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 101771 0.67 0.985743
Target:  5'- cCUUCGgcgagacggCGCCGuCCUCGcGGcGGAGCg -3'
miRNA:   3'- -GGAGCaa-------GCGGU-GGAGCaCCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 117741 0.67 0.985577
Target:  5'- gCUCGccgUCGaCCGCCUCGUcuucgcgccaugcGGgAGGGCg -3'
miRNA:   3'- gGAGCa--AGC-GGUGGAGCA-------------CCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 75633 0.67 0.98401
Target:  5'- cCCUC---CGCCGCUcCGUGG-AGAACc -3'
miRNA:   3'- -GGAGcaaGCGGUGGaGCACCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 108419 0.67 0.98401
Target:  5'- gCUCGUcugCGCCGCC-CG-GGgccgGGGGCc -3'
miRNA:   3'- gGAGCAa--GCGGUGGaGCaCCa---UCUUG- -5'
8951 3' -53 NC_002512.2 + 1685 0.67 0.982122
Target:  5'- gCCUCGacCGCgGCCUCGaaGUAGGu- -3'
miRNA:   3'- -GGAGCaaGCGgUGGAGCacCAUCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.