miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8951 5' -61.3 NC_002512.2 + 10105 0.66 0.776928
Target:  5'- gUGUCCC-CGGC-CGGGCcGGCcGCGg -3'
miRNA:   3'- aGCAGGGcGUCGuGCCCG-UCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 95809 0.66 0.776928
Target:  5'- cUCGcCCagCGCAGC-CGGuGaUGGCUGCACc -3'
miRNA:   3'- -AGCaGG--GCGUCGuGCC-C-GUCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 86628 0.66 0.776928
Target:  5'- cUCGUCCuCGuCGGCGCGGuGUGGUggauCGCg -3'
miRNA:   3'- -AGCAGG-GC-GUCGUGCC-CGUCGac--GUG- -5'
8951 5' -61.3 NC_002512.2 + 98268 0.66 0.776928
Target:  5'- gCGUCuUCGUGGC-CGGGCGgGCcggGCGCu -3'
miRNA:   3'- aGCAG-GGCGUCGuGCCCGU-CGa--CGUG- -5'
8951 5' -61.3 NC_002512.2 + 200663 0.66 0.776927
Target:  5'- gCGaCCCGCGGCcggcguuCGGGUAGaaggUGUACu -3'
miRNA:   3'- aGCaGGGCGUCGu------GCCCGUCg---ACGUG- -5'
8951 5' -61.3 NC_002512.2 + 143723 0.66 0.776927
Target:  5'- --cUCCCGCAGCAgGgccucggaGGCGGCcGCGg -3'
miRNA:   3'- agcAGGGCGUCGUgC--------CCGUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 104293 0.66 0.768024
Target:  5'- gCGUCCgGCGGC--GGGaGGCUGC-Cg -3'
miRNA:   3'- aGCAGGgCGUCGugCCCgUCGACGuG- -5'
8951 5' -61.3 NC_002512.2 + 115305 0.66 0.768024
Target:  5'- aUCGUcCCCGUAGUACaGGCggaAGUUGUugaACa -3'
miRNA:   3'- -AGCA-GGGCGUCGUGcCCG---UCGACG---UG- -5'
8951 5' -61.3 NC_002512.2 + 37281 0.66 0.768024
Target:  5'- cCGUCgcccgCCGCGGCGCGccGCAGCaGCGg -3'
miRNA:   3'- aGCAG-----GGCGUCGUGCc-CGUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 81361 0.66 0.768024
Target:  5'- ---cCUCGCGGCcgggGCGGGCGGCgGC-Cg -3'
miRNA:   3'- agcaGGGCGUCG----UGCCCGUCGaCGuG- -5'
8951 5' -61.3 NC_002512.2 + 77656 0.66 0.768024
Target:  5'- aCGUUCCGCAG-ACGGGuCGGCagGUu- -3'
miRNA:   3'- aGCAGGGCGUCgUGCCC-GUCGa-CGug -5'
8951 5' -61.3 NC_002512.2 + 137238 0.66 0.768024
Target:  5'- -gGUCCCGacgaGGaCACcGGCGGCgaGCGCu -3'
miRNA:   3'- agCAGGGCg---UC-GUGcCCGUCGa-CGUG- -5'
8951 5' -61.3 NC_002512.2 + 89759 0.66 0.768024
Target:  5'- --uUCCCGCGgucggcGCGCGGGCAuCUGaCAUc -3'
miRNA:   3'- agcAGGGCGU------CGUGCCCGUcGAC-GUG- -5'
8951 5' -61.3 NC_002512.2 + 120938 0.66 0.768024
Target:  5'- gCGaCCCGacgGGCAaGGGCggcgguaaccGGCUGCACu -3'
miRNA:   3'- aGCaGGGCg--UCGUgCCCG----------UCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 126650 0.66 0.768024
Target:  5'- --cUCgCCGCGGCcgucgACGGGCGGCgacGCGa -3'
miRNA:   3'- agcAG-GGCGUCG-----UGCCCGUCGa--CGUg -5'
8951 5' -61.3 NC_002512.2 + 16822 0.66 0.768024
Target:  5'- aCGUagCCCGCGGgGCuGGGCAGg-GCGa -3'
miRNA:   3'- aGCA--GGGCGUCgUG-CCCGUCgaCGUg -5'
8951 5' -61.3 NC_002512.2 + 137973 0.66 0.767128
Target:  5'- aUGUCCUGCGuGC-CGGGCccgagcgGGCcgUGCGCc -3'
miRNA:   3'- aGCAGGGCGU-CGuGCCCG-------UCG--ACGUG- -5'
8951 5' -61.3 NC_002512.2 + 143667 0.66 0.759012
Target:  5'- cUCGUCCCccuccccgaaGCcGgGCGGGguGUcggGCACg -3'
miRNA:   3'- -AGCAGGG----------CGuCgUGCCCguCGa--CGUG- -5'
8951 5' -61.3 NC_002512.2 + 174407 0.66 0.759012
Target:  5'- gCGuUCCCGCGGCGCcgGGGCcuccgucggGGCUacCACg -3'
miRNA:   3'- aGC-AGGGCGUCGUG--CCCG---------UCGAc-GUG- -5'
8951 5' -61.3 NC_002512.2 + 190074 0.66 0.759012
Target:  5'- cUGg-CCGCGGCcggucaGCGGGCucGGCUGCGg -3'
miRNA:   3'- aGCagGGCGUCG------UGCCCG--UCGACGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.