Results 1 - 20 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8951 | 5' | -61.3 | NC_002512.2 | + | 10105 | 0.66 | 0.776928 |
Target: 5'- gUGUCCC-CGGC-CGGGCcGGCcGCGg -3' miRNA: 3'- aGCAGGGcGUCGuGCCCG-UCGaCGUg -5' |
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8951 | 5' | -61.3 | NC_002512.2 | + | 95809 | 0.66 | 0.776928 |
Target: 5'- cUCGcCCagCGCAGC-CGGuGaUGGCUGCACc -3' miRNA: 3'- -AGCaGG--GCGUCGuGCC-C-GUCGACGUG- -5' |
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8951 | 5' | -61.3 | NC_002512.2 | + | 86628 | 0.66 | 0.776928 |
Target: 5'- cUCGUCCuCGuCGGCGCGGuGUGGUggauCGCg -3' miRNA: 3'- -AGCAGG-GC-GUCGUGCC-CGUCGac--GUG- -5' |
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8951 | 5' | -61.3 | NC_002512.2 | + | 98268 | 0.66 | 0.776928 |
Target: 5'- gCGUCuUCGUGGC-CGGGCGgGCcggGCGCu -3' miRNA: 3'- aGCAG-GGCGUCGuGCCCGU-CGa--CGUG- -5' |
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8951 | 5' | -61.3 | NC_002512.2 | + | 200663 | 0.66 | 0.776927 |
Target: 5'- gCGaCCCGCGGCcggcguuCGGGUAGaaggUGUACu -3' miRNA: 3'- aGCaGGGCGUCGu------GCCCGUCg---ACGUG- -5' |
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8951 | 5' | -61.3 | NC_002512.2 | + | 143723 | 0.66 | 0.776927 |
Target: 5'- --cUCCCGCAGCAgGgccucggaGGCGGCcGCGg -3' miRNA: 3'- agcAGGGCGUCGUgC--------CCGUCGaCGUg -5' |
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8951 | 5' | -61.3 | NC_002512.2 | + | 104293 | 0.66 | 0.768024 |
Target: 5'- gCGUCCgGCGGC--GGGaGGCUGC-Cg -3' miRNA: 3'- aGCAGGgCGUCGugCCCgUCGACGuG- -5' |
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8951 | 5' | -61.3 | NC_002512.2 | + | 115305 | 0.66 | 0.768024 |
Target: 5'- aUCGUcCCCGUAGUACaGGCggaAGUUGUugaACa -3' miRNA: 3'- -AGCA-GGGCGUCGUGcCCG---UCGACG---UG- -5' |
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8951 | 5' | -61.3 | NC_002512.2 | + | 37281 | 0.66 | 0.768024 |
Target: 5'- cCGUCgcccgCCGCGGCGCGccGCAGCaGCGg -3' miRNA: 3'- aGCAG-----GGCGUCGUGCc-CGUCGaCGUg -5' |
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8951 | 5' | -61.3 | NC_002512.2 | + | 81361 | 0.66 | 0.768024 |
Target: 5'- ---cCUCGCGGCcgggGCGGGCGGCgGC-Cg -3' miRNA: 3'- agcaGGGCGUCG----UGCCCGUCGaCGuG- -5' |
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8951 | 5' | -61.3 | NC_002512.2 | + | 77656 | 0.66 | 0.768024 |
Target: 5'- aCGUUCCGCAG-ACGGGuCGGCagGUu- -3' miRNA: 3'- aGCAGGGCGUCgUGCCC-GUCGa-CGug -5' |
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8951 | 5' | -61.3 | NC_002512.2 | + | 137238 | 0.66 | 0.768024 |
Target: 5'- -gGUCCCGacgaGGaCACcGGCGGCgaGCGCu -3' miRNA: 3'- agCAGGGCg---UC-GUGcCCGUCGa-CGUG- -5' |
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8951 | 5' | -61.3 | NC_002512.2 | + | 89759 | 0.66 | 0.768024 |
Target: 5'- --uUCCCGCGgucggcGCGCGGGCAuCUGaCAUc -3' miRNA: 3'- agcAGGGCGU------CGUGCCCGUcGAC-GUG- -5' |
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8951 | 5' | -61.3 | NC_002512.2 | + | 120938 | 0.66 | 0.768024 |
Target: 5'- gCGaCCCGacgGGCAaGGGCggcgguaaccGGCUGCACu -3' miRNA: 3'- aGCaGGGCg--UCGUgCCCG----------UCGACGUG- -5' |
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8951 | 5' | -61.3 | NC_002512.2 | + | 126650 | 0.66 | 0.768024 |
Target: 5'- --cUCgCCGCGGCcgucgACGGGCGGCgacGCGa -3' miRNA: 3'- agcAG-GGCGUCG-----UGCCCGUCGa--CGUg -5' |
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8951 | 5' | -61.3 | NC_002512.2 | + | 16822 | 0.66 | 0.768024 |
Target: 5'- aCGUagCCCGCGGgGCuGGGCAGg-GCGa -3' miRNA: 3'- aGCA--GGGCGUCgUG-CCCGUCgaCGUg -5' |
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8951 | 5' | -61.3 | NC_002512.2 | + | 137973 | 0.66 | 0.767128 |
Target: 5'- aUGUCCUGCGuGC-CGGGCccgagcgGGCcgUGCGCc -3' miRNA: 3'- aGCAGGGCGU-CGuGCCCG-------UCG--ACGUG- -5' |
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8951 | 5' | -61.3 | NC_002512.2 | + | 143667 | 0.66 | 0.759012 |
Target: 5'- cUCGUCCCccuccccgaaGCcGgGCGGGguGUcggGCACg -3' miRNA: 3'- -AGCAGGG----------CGuCgUGCCCguCGa--CGUG- -5' |
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8951 | 5' | -61.3 | NC_002512.2 | + | 174407 | 0.66 | 0.759012 |
Target: 5'- gCGuUCCCGCGGCGCcgGGGCcuccgucggGGCUacCACg -3' miRNA: 3'- aGC-AGGGCGUCGUG--CCCG---------UCGAc-GUG- -5' |
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8951 | 5' | -61.3 | NC_002512.2 | + | 190074 | 0.66 | 0.759012 |
Target: 5'- cUGg-CCGCGGCcggucaGCGGGCucGGCUGCGg -3' miRNA: 3'- aGCagGGCGUCG------UGCCCG--UCGACGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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