miRNA display CGI


Results 1 - 20 of 175 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8951 5' -61.3 NC_002512.2 + 200663 0.66 0.776927
Target:  5'- gCGaCCCGCGGCcggcguuCGGGUAGaaggUGUACu -3'
miRNA:   3'- aGCaGGGCGUCGu------GCCCGUCg---ACGUG- -5'
8951 5' -61.3 NC_002512.2 + 217328 0.66 0.731398
Target:  5'- gCGU-CUGCAGCACGuacGGCGGCaucgggacGCACg -3'
miRNA:   3'- aGCAgGGCGUCGUGC---CCGUCGa-------CGUG- -5'
8951 5' -61.3 NC_002512.2 + 185624 0.67 0.722028
Target:  5'- gCGUCCCGU-GU-CGGuGCAGCUGUcCg -3'
miRNA:   3'- aGCAGGGCGuCGuGCC-CGUCGACGuG- -5'
8951 5' -61.3 NC_002512.2 + 216657 1.1 0.001192
Target:  5'- gUCGUCCCGCAGCACGGGCAGCUGCACg -3'
miRNA:   3'- -AGCAGGGCGUCGUGCCCGUCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 137238 0.66 0.768024
Target:  5'- -gGUCCCGacgaGGaCACcGGCGGCgaGCGCu -3'
miRNA:   3'- agCAGGGCg---UC-GUGcCCGUCGa-CGUG- -5'
8951 5' -61.3 NC_002512.2 + 120938 0.66 0.768024
Target:  5'- gCGaCCCGacgGGCAaGGGCggcgguaaccGGCUGCACu -3'
miRNA:   3'- aGCaGGGCg--UCGUgCCCG----------UCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 174407 0.66 0.759012
Target:  5'- gCGuUCCCGCGGCGCcgGGGCcuccgucggGGCUacCACg -3'
miRNA:   3'- aGC-AGGGCGUCGUG--CCCG---------UCGAc-GUG- -5'
8951 5' -61.3 NC_002512.2 + 143667 0.66 0.759012
Target:  5'- cUCGUCCCccuccccgaaGCcGgGCGGGguGUcggGCACg -3'
miRNA:   3'- -AGCAGGG----------CGuCgUGCCCguCGa--CGUG- -5'
8951 5' -61.3 NC_002512.2 + 108782 0.66 0.749898
Target:  5'- gUCGUCaCCGaacucUACGGGCcGCUGCGg -3'
miRNA:   3'- -AGCAG-GGCguc--GUGCCCGuCGACGUg -5'
8951 5' -61.3 NC_002512.2 + 111286 0.66 0.731398
Target:  5'- aCGUCCCGCGGCcagacgccCGGGgucugggacCAGCUG-ACc -3'
miRNA:   3'- aGCAGGGCGUCGu-------GCCC---------GUCGACgUG- -5'
8951 5' -61.3 NC_002512.2 + 106456 0.66 0.740691
Target:  5'- -gGUCCgacUGC-GCACGGGCGGCgGgACc -3'
miRNA:   3'- agCAGG---GCGuCGUGCCCGUCGaCgUG- -5'
8951 5' -61.3 NC_002512.2 + 216804 0.66 0.749898
Target:  5'- gUCGUUgacgauggcgUCGCGGguCGGGUacGGCUGCGu -3'
miRNA:   3'- -AGCAG----------GGCGUCguGCCCG--UCGACGUg -5'
8951 5' -61.3 NC_002512.2 + 143723 0.66 0.776927
Target:  5'- --cUCCCGCAGCAgGgccucggaGGCGGCcGCGg -3'
miRNA:   3'- agcAGGGCGUCGUgC--------CCGUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 219045 0.66 0.731398
Target:  5'- gUCGUCggCCGCGGCGCGGG--GCUcccCGCg -3'
miRNA:   3'- -AGCAG--GGCGUCGUGCCCguCGAc--GUG- -5'
8951 5' -61.3 NC_002512.2 + 126650 0.66 0.768024
Target:  5'- --cUCgCCGCGGCcgucgACGGGCGGCgacGCGa -3'
miRNA:   3'- agcAG-GGCGUCG-----UGCCCGUCGa--CGUg -5'
8951 5' -61.3 NC_002512.2 + 192018 0.66 0.749898
Target:  5'- cCGUCCUgGCgGGCGCGGG-AGCgGCGg -3'
miRNA:   3'- aGCAGGG-CG-UCGUGCCCgUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 184076 0.66 0.731398
Target:  5'- aUGUCucgcaaggaaCCGCAGCACGgcccccGGCGGgUGCAg -3'
miRNA:   3'- aGCAG----------GGCGUCGUGC------CCGUCgACGUg -5'
8951 5' -61.3 NC_002512.2 + 182226 0.66 0.728595
Target:  5'- aCGUUCgGCGGCGCcacgugcuucagcaGGGaCAGCgacgGCGCc -3'
miRNA:   3'- aGCAGGgCGUCGUG--------------CCC-GUCGa---CGUG- -5'
8951 5' -61.3 NC_002512.2 + 77656 0.66 0.768024
Target:  5'- aCGUUCCGCAG-ACGGGuCGGCagGUu- -3'
miRNA:   3'- aGCAGGGCGUCgUGCCC-GUCGa-CGug -5'
8951 5' -61.3 NC_002512.2 + 190074 0.66 0.759012
Target:  5'- cUGg-CCGCGGCcggucaGCGGGCucGGCUGCGg -3'
miRNA:   3'- aGCagGGCGUCG------UGCCCG--UCGACGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.