miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 3' -57.1 NC_002512.2 + 220655 0.66 0.943957
Target:  5'- -gCGCGAGCGCcaccugGCCCGccgcGUCGUgcugGGCGa -3'
miRNA:   3'- ugGUGCUUGCG------CGGGCu---CAGCA----UCGU- -5'
8952 3' -57.1 NC_002512.2 + 125996 0.67 0.914012
Target:  5'- gUCGCGuaccGACGCGUaCCGuuUCGUAGCGc -3'
miRNA:   3'- uGGUGC----UUGCGCG-GGCucAGCAUCGU- -5'
8952 3' -57.1 NC_002512.2 + 150912 0.67 0.908248
Target:  5'- gGCCGCGGACGacgcuaaGUCCGAGcCGgacuuaGGCu -3'
miRNA:   3'- -UGGUGCUUGCg------CGGGCUCaGCa-----UCGu -5'
8952 3' -57.1 NC_002512.2 + 216526 1.08 0.004266
Target:  5'- cACCACGAACGCGCCCGAGUCGUAGCAg -3'
miRNA:   3'- -UGGUGCUUGCGCGGGCUCAGCAUCGU- -5'
8952 3' -57.1 NC_002512.2 + 199221 0.66 0.93675
Target:  5'- gACCGCGccgcccgguagauccGGCGCaGCCCGAuGUCG-AGUc -3'
miRNA:   3'- -UGGUGC---------------UUGCG-CGGGCU-CAGCaUCGu -5'
8952 3' -57.1 NC_002512.2 + 95021 0.66 0.934861
Target:  5'- cCC-CGAcgGCGuCGCCCGAGaCGUcGCGc -3'
miRNA:   3'- uGGuGCU--UGC-GCGGGCUCaGCAuCGU- -5'
8952 3' -57.1 NC_002512.2 + 223517 0.66 0.934861
Target:  5'- gACCACGGcggagaacggcACGCGCCCGcGgccCGcGGCc -3'
miRNA:   3'- -UGGUGCU-----------UGCGCGGGCuCa--GCaUCGu -5'
8952 3' -57.1 NC_002512.2 + 216808 0.66 0.934861
Target:  5'- uUgACGAugGCGUCgCGGGUCGgguacGGCu -3'
miRNA:   3'- uGgUGCUugCGCGG-GCUCAGCa----UCGu -5'
8952 3' -57.1 NC_002512.2 + 107840 0.66 0.92488
Target:  5'- aGCCGCcGACGcCGcCCCGGG-CGUGcGCGa -3'
miRNA:   3'- -UGGUGcUUGC-GC-GGGCUCaGCAU-CGU- -5'
8952 3' -57.1 NC_002512.2 + 147197 0.67 0.914012
Target:  5'- cGCgCACGGACGCcgacaGCCCGAG-CGggaccGCGa -3'
miRNA:   3'- -UG-GUGCUUGCG-----CGGGCUCaGCau---CGU- -5'
8952 3' -57.1 NC_002512.2 + 154261 0.66 0.919557
Target:  5'- cCCGCGugcGCGUGCCCGcGUgcgCGUGcGCAg -3'
miRNA:   3'- uGGUGCu--UGCGCGGGCuCA---GCAU-CGU- -5'
8952 3' -57.1 NC_002512.2 + 201415 0.66 0.92488
Target:  5'- uCCACG-AUGCGCUucuggugucggCGGGUCGUcGCGa -3'
miRNA:   3'- uGGUGCuUGCGCGG-----------GCUCAGCAuCGU- -5'
8952 3' -57.1 NC_002512.2 + 123761 0.66 0.943957
Target:  5'- aGCCugACGAACGgcccgguguucCGCCCgggcGAGUCGaAGCGg -3'
miRNA:   3'- -UGG--UGCUUGC-----------GCGGG----CUCAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 198144 0.66 0.919557
Target:  5'- -gCGCGAGCcccGCGCgggCCGGGUCGgcGCc -3'
miRNA:   3'- ugGUGCUUG---CGCG---GGCUCAGCauCGu -5'
8952 3' -57.1 NC_002512.2 + 105012 0.66 0.943957
Target:  5'- -gCACGGGCGCGucgagcCCCGcgcaGGUCauGUAGCAg -3'
miRNA:   3'- ugGUGCUUGCGC------GGGC----UCAG--CAUCGU- -5'
8952 3' -57.1 NC_002512.2 + 113203 0.66 0.929481
Target:  5'- uCCGCGAGCGggagccggguccuCGCCCGGGgagaCG-GGCAc -3'
miRNA:   3'- uGGUGCUUGC-------------GCGGGCUCa---GCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 95772 0.66 0.919557
Target:  5'- cGCCugGAcggGgGCGUCCGAG-CGguaGGCGc -3'
miRNA:   3'- -UGGugCU---UgCGCGGGCUCaGCa--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 192269 0.67 0.908248
Target:  5'- -aCGCGAGCGUGCUCGGGaCGcucuGCGu -3'
miRNA:   3'- ugGUGCUUGCGCGGGCUCaGCau--CGU- -5'
8952 3' -57.1 NC_002512.2 + 216745 0.66 0.939519
Target:  5'- uCCGCGA--GCGCCCG-GUCGaacgAGUg -3'
miRNA:   3'- uGGUGCUugCGCGGGCuCAGCa---UCGu -5'
8952 3' -57.1 NC_002512.2 + 221842 0.66 0.934861
Target:  5'- cCCGCGGGgGCGCCuCGGGaccgggaccucUCGgAGCGg -3'
miRNA:   3'- uGGUGCUUgCGCGG-GCUC-----------AGCaUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.