miRNA display CGI


Results 41 - 60 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 3' -66.3 NC_002512.2 + 224703 0.66 0.604114
Target:  5'- uGCC-CGCCCugcuGGGGCCGgcCGccgCCCCGg -3'
miRNA:   3'- gCGGcGCGGGc---UCCUGGC--GCa--GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 121336 0.66 0.604114
Target:  5'- gGUCGgaagGCCCGGcGGACCuucuccgccgucGgGUCCCCGg -3'
miRNA:   3'- gCGGCg---CGGGCU-CCUGG------------CgCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 211133 0.66 0.604114
Target:  5'- gCGUCGaGgCCGAGGACCuggGCGUCaUCCa -3'
miRNA:   3'- -GCGGCgCgGGCUCCUGG---CGCAG-GGGc -5'
8953 3' -66.3 NC_002512.2 + 100579 0.66 0.604114
Target:  5'- gCGCCggGCGCUCGggugGGGAaaCCGCG-CCCgCGg -3'
miRNA:   3'- -GCGG--CGCGGGC----UCCU--GGCGCaGGG-GC- -5'
8953 3' -66.3 NC_002512.2 + 220832 0.66 0.604114
Target:  5'- gGCCGUGCUCGucgacGGGCUGUGUCgCg- -3'
miRNA:   3'- gCGGCGCGGGCu----CCUGGCGCAGgGgc -5'
8953 3' -66.3 NC_002512.2 + 114775 0.66 0.604114
Target:  5'- gGUCGCGa-CGGGGcACgGCGUCCCg- -3'
miRNA:   3'- gCGGCGCggGCUCC-UGgCGCAGGGgc -5'
8953 3' -66.3 NC_002512.2 + 148434 0.66 0.604114
Target:  5'- cCGCCGgGggaggaCGGGGGCCGgGcCCCCc -3'
miRNA:   3'- -GCGGCgCgg----GCUCCUGGCgCaGGGGc -5'
8953 3' -66.3 NC_002512.2 + 155366 0.66 0.604114
Target:  5'- aGCgGCGCUCGAGGucgggGCgGCGgCgCCGg -3'
miRNA:   3'- gCGgCGCGGGCUCC-----UGgCGCaGgGGC- -5'
8953 3' -66.3 NC_002512.2 + 69749 0.66 0.604114
Target:  5'- aCGCgGCGCCC--GGAUCGCcaCCUCGc -3'
miRNA:   3'- -GCGgCGCGGGcuCCUGGCGcaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 96951 0.66 0.604114
Target:  5'- gCGUCGCGCcgaCCGucGuCCGCGUCUuCCGc -3'
miRNA:   3'- -GCGGCGCG---GGCucCuGGCGCAGG-GGC- -5'
8953 3' -66.3 NC_002512.2 + 162403 0.66 0.604114
Target:  5'- aCGuuGCGUUCGaAGuGAauGUGUCCCCGc -3'
miRNA:   3'- -GCggCGCGGGC-UC-CUggCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 86663 0.66 0.604114
Target:  5'- gGCCGCGUCCGAgcGGACgGCG-CgCg- -3'
miRNA:   3'- gCGGCGCGGGCU--CCUGgCGCaGgGgc -5'
8953 3' -66.3 NC_002512.2 + 212826 0.66 0.604114
Target:  5'- -uCCGCGCcgCCGGGGuugggcgcgggcGCCGUccGUCCCCu -3'
miRNA:   3'- gcGGCGCG--GGCUCC------------UGGCG--CAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 118226 0.66 0.604114
Target:  5'- gGCCcucGUGCUCGGGGACgGCaccGUCCUgGa -3'
miRNA:   3'- gCGG---CGCGGGCUCCUGgCG---CAGGGgC- -5'
8953 3' -66.3 NC_002512.2 + 98532 0.66 0.603199
Target:  5'- -aCCGCGCCgGcuGGGACCucgcccgGCGUUCCgCGg -3'
miRNA:   3'- gcGGCGCGGgC--UCCUGG-------CGCAGGG-GC- -5'
8953 3' -66.3 NC_002512.2 + 76496 0.66 0.602284
Target:  5'- cCGCCGCGCUCcacgucgcuccGGACCGCcagCCgCCGc -3'
miRNA:   3'- -GCGGCGCGGGcu---------CCUGGCGca-GG-GGC- -5'
8953 3' -66.3 NC_002512.2 + 142080 0.66 0.598627
Target:  5'- cCGCCGCGCCCGccucgacgacacacaGGaGACCGCagagaagaaUCagCCCGa -3'
miRNA:   3'- -GCGGCGCGGGC---------------UC-CUGGCGc--------AG--GGGC- -5'
8953 3' -66.3 NC_002512.2 + 134701 0.66 0.594972
Target:  5'- uCGCCGggcUGCCCGAcauccuggGGGCCGgGggaaggCUCCGg -3'
miRNA:   3'- -GCGGC---GCGGGCU--------CCUGGCgCa-----GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 83003 0.66 0.594972
Target:  5'- aGCUGCGCCUGGGccuCCggGCGguaguggCCCCGc -3'
miRNA:   3'- gCGGCGCGGGCUCcu-GG--CGCa------GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 29693 0.66 0.594972
Target:  5'- uCGUCGCGCUCguccgucucgGAGGAgcccaugaCCGUGUCgCCCu -3'
miRNA:   3'- -GCGGCGCGGG----------CUCCU--------GGCGCAG-GGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.