miRNA display CGI


Results 41 - 60 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 3' -66.3 NC_002512.2 + 216444 0.66 0.616941
Target:  5'- cCGCCGCccucuccaucgagaaGCCC-AGGuaGCCgGCGUCCCa- -3'
miRNA:   3'- -GCGGCG---------------CGGGcUCC--UGG-CGCAGGGgc -5'
8953 3' -66.3 NC_002512.2 + 216159 0.71 0.314393
Target:  5'- gCGUCGCGCCCcucAGGcucCCGCGUCUCgGg -3'
miRNA:   3'- -GCGGCGCGGGc--UCCu--GGCGCAGGGgC- -5'
8953 3' -66.3 NC_002512.2 + 215690 0.67 0.557769
Target:  5'- gGCUGCccuucugGUUCGGGGACCGCaUCCCg- -3'
miRNA:   3'- gCGGCG-------CGGGCUCCUGGCGcAGGGgc -5'
8953 3' -66.3 NC_002512.2 + 215079 0.66 0.622444
Target:  5'- -aCCGCGUcggcgggaCCGAGGACUuCGUCgCCGc -3'
miRNA:   3'- gcGGCGCG--------GGCUCCUGGcGCAGgGGC- -5'
8953 3' -66.3 NC_002512.2 + 214421 1.07 0.001021
Target:  5'- gCGCCGCGCCCGAGGACCGCGUCCCCGu -3'
miRNA:   3'- -GCGGCGCGGGCUCCUGGCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 214252 0.72 0.283363
Target:  5'- cCGcCCGCGgCCGAGGAguuCCGCuGUCgCCUGg -3'
miRNA:   3'- -GC-GGCGCgGGCUCCU---GGCG-CAG-GGGC- -5'
8953 3' -66.3 NC_002512.2 + 213007 0.74 0.223707
Target:  5'- cCGUCGgGCCCGGGGcCCucucgagguGCGUCCgCCGg -3'
miRNA:   3'- -GCGGCgCGGGCUCCuGG---------CGCAGG-GGC- -5'
8953 3' -66.3 NC_002512.2 + 212826 0.66 0.604114
Target:  5'- -uCCGCGCcgCCGGGGuugggcgcgggcGCCGUccGUCCCCu -3'
miRNA:   3'- gcGGCGCG--GGCUCC------------UGGCG--CAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 211985 0.69 0.429485
Target:  5'- gGCCGuCGUCCucGGGGCCGCcgccgccuaucacGUCCCCc -3'
miRNA:   3'- gCGGC-GCGGGc-UCCUGGCG-------------CAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 211764 0.7 0.359893
Target:  5'- gCGCUGCgggaggacguggagGCCCGGGuGGCCGCGggggccgUCCCGc -3'
miRNA:   3'- -GCGGCG--------------CGGGCUC-CUGGCGCa------GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 211133 0.66 0.604114
Target:  5'- gCGUCGaGgCCGAGGACCuggGCGUCaUCCa -3'
miRNA:   3'- -GCGGCgCgGGCUCCUGG---CGCAG-GGGc -5'
8953 3' -66.3 NC_002512.2 + 209017 0.72 0.283363
Target:  5'- uCGUCGcCGCCaugagCGGGGcgGCCGCGUCCCgGa -3'
miRNA:   3'- -GCGGC-GCGG-----GCUCC--UGGCGCAGGGgC- -5'
8953 3' -66.3 NC_002512.2 + 208785 0.69 0.414468
Target:  5'- gGuCCGCGUCUGA-GACgGCGgucgCCCCGg -3'
miRNA:   3'- gC-GGCGCGGGCUcCUGgCGCa---GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 208674 0.84 0.047629
Target:  5'- gGCgGCGuCCCGGGGGCCGCuGUCCCUGg -3'
miRNA:   3'- gCGgCGC-GGGCUCCUGGCG-CAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 207510 0.7 0.383935
Target:  5'- -uCCGCGaCCGAcgacgaggacgGGGCCGCGUCCUCc -3'
miRNA:   3'- gcGGCGCgGGCU-----------CCUGGCGCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 205175 0.7 0.369238
Target:  5'- aCGCCGCGUCUcccucGcCCGCGUCCUCGa -3'
miRNA:   3'- -GCGGCGCGGGcuc--CuGGCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 205017 0.76 0.149232
Target:  5'- aCGaCGCGCCuCGgucGGGGCCGCGUCCgCCGc -3'
miRNA:   3'- -GCgGCGCGG-GC---UCCUGGCGCAGG-GGC- -5'
8953 3' -66.3 NC_002512.2 + 204782 0.7 0.354931
Target:  5'- aCGaCCGggggaaggagaCGCCCGGGaGGuCCGCGUCCCgGg -3'
miRNA:   3'- -GC-GGC-----------GCGGGCUC-CU-GGCGCAGGGgC- -5'
8953 3' -66.3 NC_002512.2 + 202308 0.71 0.307987
Target:  5'- cCGCCGCGCUUuuGGGCCGC-UCCgCCa -3'
miRNA:   3'- -GCGGCGCGGGcuCCUGGCGcAGG-GGc -5'
8953 3' -66.3 NC_002512.2 + 202092 0.66 0.566791
Target:  5'- gCGCCGgucaccuCGUCCGA---CCGCGUCCUCGu -3'
miRNA:   3'- -GCGGC-------GCGGGCUccuGGCGCAGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.