miRNA display CGI


Results 21 - 40 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 3' -66.3 NC_002512.2 + 212826 0.66 0.604114
Target:  5'- -uCCGCGCcgCCGGGGuugggcgcgggcGCCGUccGUCCCCu -3'
miRNA:   3'- gcGGCGCG--GGCUCC------------UGGCG--CAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 103717 0.66 0.613273
Target:  5'- gCGCCGCcaugauCCUGAaccGGACCGCGgcgaUCCUGa -3'
miRNA:   3'- -GCGGCGc-----GGGCU---CCUGGCGCa---GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 217501 0.66 0.621527
Target:  5'- cCGCCGcCGCCCGAaggcgagcucgggGGGUCGCGguUCaCCUGg -3'
miRNA:   3'- -GCGGC-GCGGGCU-------------CCUGGCGC--AG-GGGC- -5'
8953 3' -66.3 NC_002512.2 + 174911 0.66 0.622444
Target:  5'- uCGCacaGCGCCUG-GGuCaGCGUCUCCa -3'
miRNA:   3'- -GCGg--CGCGGGCuCCuGgCGCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 200572 0.66 0.594972
Target:  5'- -aUCGCGCCCGcGGuCCGUcguGUCCUCu -3'
miRNA:   3'- gcGGCGCGGGCuCCuGGCG---CAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 211133 0.66 0.604114
Target:  5'- gCGUCGaGgCCGAGGACCuggGCGUCaUCCa -3'
miRNA:   3'- -GCGGCgCgGGCUCCUGG---CGCAG-GGGc -5'
8953 3' -66.3 NC_002512.2 + 225033 0.66 0.613273
Target:  5'- aCGCgGCGaacCCCGcgauGGCCGCGcUCCUCGg -3'
miRNA:   3'- -GCGgCGC---GGGCuc--CUGGCGC-AGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 215079 0.66 0.622444
Target:  5'- -aCCGCGUcggcgggaCCGAGGACUuCGUCgCCGc -3'
miRNA:   3'- gcGGCGCG--------GGCUCCUGGcGCAGgGGC- -5'
8953 3' -66.3 NC_002512.2 + 220832 0.66 0.604114
Target:  5'- gGCCGUGCUCGucgacGGGCUGUGUCgCg- -3'
miRNA:   3'- gCGGCGCGGGCu----CCUGGCGCAGgGgc -5'
8953 3' -66.3 NC_002512.2 + 218499 0.66 0.622444
Target:  5'- uCGuCCGCGUCCGAgccgucGGACCccuCGUCgUCCGa -3'
miRNA:   3'- -GC-GGCGCGGGCU------CCUGGc--GCAG-GGGC- -5'
8953 3' -66.3 NC_002512.2 + 217742 0.66 0.613273
Target:  5'- gGaCCGCGaCuuGAagaagaaccccGGGCC-CGUCCCCGu -3'
miRNA:   3'- gC-GGCGC-GggCU-----------CCUGGcGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 150955 0.66 0.604114
Target:  5'- gGCCGCGgaCUCGGaggcGGGCuCGCGUCgCCa -3'
miRNA:   3'- gCGGCGC--GGGCU----CCUG-GCGCAGgGGc -5'
8953 3' -66.3 NC_002512.2 + 166461 0.66 0.613273
Target:  5'- gCGCCGgGCUCGAGGGCggggacgGCGggaCCgCGg -3'
miRNA:   3'- -GCGGCgCGGGCUCCUGg------CGCa--GGgGC- -5'
8953 3' -66.3 NC_002512.2 + 216444 0.66 0.616941
Target:  5'- cCGCCGCccucuccaucgagaaGCCC-AGGuaGCCgGCGUCCCa- -3'
miRNA:   3'- -GCGGCG---------------CGGGcUCC--UGG-CGCAGGGgc -5'
8953 3' -66.3 NC_002512.2 + 108514 0.66 0.622444
Target:  5'- gGCCcgGCGCCCGAccGGCCGgGgaCCCGa -3'
miRNA:   3'- gCGG--CGCGGGCUc-CUGGCgCagGGGC- -5'
8953 3' -66.3 NC_002512.2 + 164482 0.66 0.622444
Target:  5'- cCGCCGaGCUaCGAGGACUccaCGUCCCa- -3'
miRNA:   3'- -GCGGCgCGG-GCUCCUGGc--GCAGGGgc -5'
8953 3' -66.3 NC_002512.2 + 201994 0.66 0.589496
Target:  5'- aCGCgGUgugGCUCGucucggacagguggcGGGGCCGgGUCCCCc -3'
miRNA:   3'- -GCGgCG---CGGGC---------------UCCUGGCgCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 195552 0.66 0.594972
Target:  5'- cCGCUcaGCuCCCGGGucGCCGgGUCCCUGa -3'
miRNA:   3'- -GCGG--CGcGGGCUCc-UGGCgCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 142080 0.66 0.598627
Target:  5'- cCGCCGCGCCCGccucgacgacacacaGGaGACCGCagagaagaaUCagCCCGa -3'
miRNA:   3'- -GCGGCGCGGGC---------------UC-CUGGCGc--------AG--GGGC- -5'
8953 3' -66.3 NC_002512.2 + 114775 0.66 0.604114
Target:  5'- gGUCGCGa-CGGGGcACgGCGUCCCg- -3'
miRNA:   3'- gCGGCGCggGCUCC-UGgCGCAGGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.