miRNA display CGI


Results 21 - 40 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 3' -60.6 NC_002512.2 + 213653 0.66 0.80413
Target:  5'- gGCGACGacgacgaugaCGGAGGCGGaGGGgagcccgGCGu -3'
miRNA:   3'- gCGCUGCgg--------GCCUCCGCUaUCCa------CGC- -5'
8954 3' -60.6 NC_002512.2 + 202512 0.66 0.80413
Target:  5'- gGCGGCGgaggCGGAGGCGGcggcgGGG-GCGg -3'
miRNA:   3'- gCGCUGCgg--GCCUCCGCUa----UCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 208674 0.66 0.820465
Target:  5'- gGCGGCGuCCCGGGGGCcgcugucccugGAcGGGUa-- -3'
miRNA:   3'- gCGCUGC-GGGCCUCCG-----------CUaUCCAcgc -5'
8954 3' -60.6 NC_002512.2 + 227506 0.66 0.84383
Target:  5'- aCGCcGCGaCCCGGGGGgGAgaguccGGcgGCGg -3'
miRNA:   3'- -GCGcUGC-GGGCCUCCgCUau----CCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 227606 0.68 0.743044
Target:  5'- cCGCaGCGgCCGGAgGGCGGgcGGcgGCGg -3'
miRNA:   3'- -GCGcUGCgGGCCU-CCGCUauCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 129099 0.67 0.78725
Target:  5'- aGCG-UGUCggCGGAGGCGuuccGGGUGCa -3'
miRNA:   3'- gCGCuGCGG--GCCUCCGCua--UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 116198 0.66 0.81237
Target:  5'- uGCGG-GCCaGGcAGGCGGUcgagcugacgaAGGUGCGc -3'
miRNA:   3'- gCGCUgCGGgCC-UCCGCUA-----------UCCACGC- -5'
8954 3' -60.6 NC_002512.2 + 100653 0.66 0.851289
Target:  5'- aCGCGggaugguacAgGUCCGuGAGGUaGUAGGUGCu -3'
miRNA:   3'- -GCGC---------UgCGGGC-CUCCGcUAUCCACGc -5'
8954 3' -60.6 NC_002512.2 + 201446 0.67 0.78725
Target:  5'- uCGCGAUcucgGCCUcGAGGUGGUccccgucggccgGGGUGCa -3'
miRNA:   3'- -GCGCUG----CGGGcCUCCGCUA------------UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 155350 0.66 0.851289
Target:  5'- cCGCGGCcGCCUGGcuguaccucgucAGGCGGgaccgcgAGGcugGCGa -3'
miRNA:   3'- -GCGCUG-CGGGCC------------UCCGCUa------UCCa--CGC- -5'
8954 3' -60.6 NC_002512.2 + 227225 0.66 0.80413
Target:  5'- gGCGGCGgaCCgGGAGGCGcgGcGGacggGCGg -3'
miRNA:   3'- gCGCUGC--GGgCCUCCGCuaU-CCa---CGC- -5'
8954 3' -60.6 NC_002512.2 + 153395 0.66 0.80413
Target:  5'- aGCGACguggaGCgCGGcGGCGGUcgAGGUGgCGg -3'
miRNA:   3'- gCGCUG-----CGgGCCuCCGCUA--UCCAC-GC- -5'
8954 3' -60.6 NC_002512.2 + 201653 0.66 0.819662
Target:  5'- gCGCGACGgcCCCGGccGCGGUuccuucuucggcgAGG-GCGg -3'
miRNA:   3'- -GCGCUGC--GGGCCucCGCUA-------------UCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 196192 0.66 0.820465
Target:  5'- gGCGACGgCCGGGucccuGGCGAgccuccGGcGCGu -3'
miRNA:   3'- gCGCUGCgGGCCU-----CCGCUau----CCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 103325 0.66 0.836202
Target:  5'- gGcCGAgGCCCGGGcGGCGuagcccGGG-GCGg -3'
miRNA:   3'- gC-GCUgCGGGCCU-CCGCua----UCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 201823 0.66 0.840798
Target:  5'- cCGCcGCGCCCGGGGGCuccuuccGCGg -3'
miRNA:   3'- -GCGcUGCGGGCCUCCGcuauccaCGC- -5'
8954 3' -60.6 NC_002512.2 + 219780 0.68 0.733918
Target:  5'- cCGCGGCcgGCCCGGccgGGGacacaGAUAGGggacGCGc -3'
miRNA:   3'- -GCGCUG--CGGGCC---UCCg----CUAUCCa---CGC- -5'
8954 3' -60.6 NC_002512.2 + 222336 0.68 0.743044
Target:  5'- gGCGGCGCCUccaGGAGGagg-AGGaGCGg -3'
miRNA:   3'- gCGCUGCGGG---CCUCCgcuaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 150558 0.67 0.761034
Target:  5'- cCGCGAC-CUgGGAGGgGAggAGGaGCGg -3'
miRNA:   3'- -GCGCUGcGGgCCUCCgCUa-UCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 116732 0.67 0.769882
Target:  5'- cCGaCGugGCCCGGcugauGGCGAUGGaccagGCc -3'
miRNA:   3'- -GC-GCugCGGGCCu----CCGCUAUCca---CGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.