miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 3' -60.6 NC_002512.2 + 206561 0.66 0.851289
Target:  5'- cCGcCGGCgGCCCGG-GGCGccagaacugcAGGUGCc -3'
miRNA:   3'- -GC-GCUG-CGGGCCuCCGCua--------UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 116198 0.66 0.81237
Target:  5'- uGCGG-GCCaGGcAGGCGGUcgagcugacgaAGGUGCGc -3'
miRNA:   3'- gCGCUgCGGgCC-UCCGCUA-----------UCCACGC- -5'
8954 3' -60.6 NC_002512.2 + 202512 0.66 0.80413
Target:  5'- gGCGGCGgaggCGGAGGCGGcggcgGGG-GCGg -3'
miRNA:   3'- gCGCUGCgg--GCCUCCGCUa----UCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 214010 1.08 0.002437
Target:  5'- gCGCGACGCCCGGAGGCGAUAGGUGCGu -3'
miRNA:   3'- -GCGCUGCGGGCCUCCGCUAUCCACGC- -5'
8954 3' -60.6 NC_002512.2 + 201823 0.66 0.840798
Target:  5'- cCGCcGCGCCCGGGGGCuccuuccGCGg -3'
miRNA:   3'- -GCGcUGCGGGCCUCCGcuauccaCGC- -5'
8954 3' -60.6 NC_002512.2 + 126581 0.66 0.836202
Target:  5'- gGCGaACGCCCGGAucuGG-GAcAGGUcccgGCGg -3'
miRNA:   3'- gCGC-UGCGGGCCU---CCgCUaUCCA----CGC- -5'
8954 3' -60.6 NC_002512.2 + 103325 0.66 0.836202
Target:  5'- gGcCGAgGCCCGGGcGGCGuagcccGGG-GCGg -3'
miRNA:   3'- gC-GCUgCGGGCCU-CCGCua----UCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 127252 0.66 0.833882
Target:  5'- gGCGACGgCCGGAacGGCGAcGGcGUucccccgggcguugGCGg -3'
miRNA:   3'- gCGCUGCgGGCCU--CCGCUaUC-CA--------------CGC- -5'
8954 3' -60.6 NC_002512.2 + 196192 0.66 0.820465
Target:  5'- gGCGACGgCCGGGucccuGGCGAgccuccGGcGCGu -3'
miRNA:   3'- gCGCUGCgGGCCU-----CCGCUau----CCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 131686 0.66 0.81237
Target:  5'- gGCGGugaGCCCGGAGcGCaGGUAG-UGCu -3'
miRNA:   3'- gCGCUg--CGGGCCUC-CG-CUAUCcACGc -5'
8954 3' -60.6 NC_002512.2 + 108807 0.66 0.820465
Target:  5'- uGCgGGCGCuguuCCGcGAGGCGugcgAGGUGUa -3'
miRNA:   3'- gCG-CUGCG----GGC-CUCCGCua--UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 208674 0.66 0.820465
Target:  5'- gGCGGCGuCCCGGGGGCcgcugucccugGAcGGGUa-- -3'
miRNA:   3'- gCGCUGC-GGGCCUCCG-----------CUaUCCAcgc -5'
8954 3' -60.6 NC_002512.2 + 155350 0.66 0.851289
Target:  5'- cCGCGGCcGCCUGGcuguaccucgucAGGCGGgaccgcgAGGcugGCGa -3'
miRNA:   3'- -GCGCUG-CGGGCC------------UCCGCUa------UCCa--CGC- -5'
8954 3' -60.6 NC_002512.2 + 201653 0.66 0.819662
Target:  5'- gCGCGACGgcCCCGGccGCGGUuccuucuucggcgAGG-GCGg -3'
miRNA:   3'- -GCGCUGC--GGGCCucCGCUA-------------UCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 100653 0.66 0.851289
Target:  5'- aCGCGggaugguacAgGUCCGuGAGGUaGUAGGUGCu -3'
miRNA:   3'- -GCGC---------UgCGGGC-CUCCGcUAUCCACGc -5'
8954 3' -60.6 NC_002512.2 + 219413 0.66 0.820465
Target:  5'- cCGCGACGCCCacgcccGGGGCGGcg---GCGg -3'
miRNA:   3'- -GCGCUGCGGGc-----CUCCGCUauccaCGC- -5'
8954 3' -60.6 NC_002512.2 + 180016 0.66 0.819662
Target:  5'- aGCGggacucgaucACGCUCGGgaucuccgaucccAGGCGGUgcGGGUGCc -3'
miRNA:   3'- gCGC----------UGCGGGCC-------------UCCGCUA--UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 227225 0.66 0.80413
Target:  5'- gGCGGCGgaCCgGGAGGCGcgGcGGacggGCGg -3'
miRNA:   3'- gCGCUGC--GGgCCUCCGCuaU-CCa---CGC- -5'
8954 3' -60.6 NC_002512.2 + 227506 0.66 0.84383
Target:  5'- aCGCcGCGaCCCGGGGGgGAgaguccGGcgGCGg -3'
miRNA:   3'- -GCGcUGC-GGGCCUCCgCUau----CCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 115574 0.66 0.836202
Target:  5'- aGCGugGCgCUGGAGcaccuGCGccGGGUGUa -3'
miRNA:   3'- gCGCugCG-GGCCUC-----CGCuaUCCACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.